PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011084950.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

MYB_related

Protein Properties

Length: 553aa MW: 59061.9 Da PI: 7.5435

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011084950.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.3	1.8e-08	205	231	3	29
SS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIar 29 W+te+d +l av+++G ++W+ Iar XP_011084950.1 205 GWSTEDDVKLTAAVQKYGERNWADIAR 231 6*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.865	198	255	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-11	199	254	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.17E-11	199	253	IPR009057	Homeodomain-like
SMART	SM00717	5.8E-8	202	253	IPR001005	SANT/Myb domain
Pfam	PF00249	9.8E-6	205	231	IPR001005	SANT/Myb domain
CDD	cd11660	6.56E-9	206	252	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence Send to blast
MVEKSKIRKK GSIGEEDISA LLQRYSVKTV LTLLQEVANV AGEKIDWGAV VKNTATEISS 60 ARECQMLWRH LAYGQTLIDQ FDNAPDPMDD DSDLEYELEA FPAITRETSV EAAACVKVLI 120 ASDYPIDSHL PNNLTIEAPL TINVPRFKTL TAASDCTLAN VIQGTNISIP VSVQKQPLSS 180 GSSGEKRPNN GTSGVNLPPR RKRRGWSTED DVKLTAAVQK YGERNWADIA RGDFENDRKA 240 SELSQRWANL RKKQGNLNVV TGSQLSEAQL AAAHRAMSLA LDMPMGDNLK AARQMNSVGT 300 KSQPQSQKAS ASPPDQQLGM AGPSKSQVPN KRPSMNPTTG LDSMIKAAAV AAGARIATAT 360 DASSIIEAAR SQNVVHIITG GSSVMKSSTT STSNQLPSNV HFIRNGLTKS PISTYCATPS 420 SRPSEAQQAQ GISIRPAEPA VQSNPVGSAR VLNASSTPSI GVTKTAEVAV VSTSSSEMKE 480 LVQRDQNAGL ANVYDSVQAD QMSENQSAPL GSQSKEKVDI HQTSTSGNVL RGNTEENQPS 540 TSLRNPISQT QDD

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence Send to blast

MVEKSKIRKK GSIGEEDISA LLQRYSVKTV LTLLQEVANV AGEKIDWGAV VKNTATEISS  60
ARECQMLWRH LAYGQTLIDQ FDNAPDPMDD DSDLEYELEA FPAITRETSV EAAACVKVLI  120
ASDYPIDSHL PNNLTIEAPL TINVPRFKTL TAASDCTLAN VIQGTNISIP VSVQKQPLSS  180
GSSGEKRPNN GTSGVNLPPR RKRRGWSTED DVKLTAAVQK YGERNWADIA RGDFENDRKA  240
SELSQRWANL RKKQGNLNVV TGSQLSEAQL AAAHRAMSLA LDMPMGDNLK AARQMNSVGT  300
KSQPQSQKAS ASPPDQQLGM AGPSKSQVPN KRPSMNPTTG LDSMIKAAAV AAGARIATAT  360
DASSIIEAAR SQNVVHIITG GSSVMKSSTT STSNQLPSNV HFIRNGLTKS PISTYCATPS  420
SRPSEAQQAQ GISIRPAEPA VQSNPVGSAR VLNASSTPSI GVTKTAEVAV VSTSSSEMKE  480
LVQRDQNAGL ANVYDSVQAD QMSENQSAPL GSQSKEKVDI HQTSTSGNVL RGNTEENQPS  540
TSLRNPISQT QDD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011084950.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084950.1	0.0	uncharacterized protein LOC105167083
Refseq	XP_011084951.1	0.0	uncharacterized protein LOC105167083
TrEMBL	A0A2G9HEQ9	0.0	A0A2G9HEQ9_9LAMI; Uncharacterized protein
STRING	Migut.F01437.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3434	22	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	4e-60	MYB_related family protein