PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084041.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 625aa    MW: 70535.5 Da    PI: 7.3759
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.97.5e-1833123199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk++       s+ l+lp kfa++ ++    ++++++ed++g +W+v+l  +   g+  ++kGW +F  ++gLkeg+fvvF +++ s f  vv+
  XP_011084041.1  33 FFKIMFGT--DYSNVLYLPPKFARTVKHL--AGQEIQIEDSTGLRWSVTL--SHVNGSLAFQKGWPKFFLDHGLKEGEFVVFNYVKGSHF--VVQ 119
                     56666333..345679*******999766..5569***************..55555689************************998888..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++ k
  XP_011084041.1 120 IYGK 123
                     8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.74731124IPR003340B3 DNA binding domain
CDDcd100178.52E-2032121No hitNo description
SuperFamilySSF1019362.75E-2232126IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-2132125IPR015300DNA-binding pseudobarrel domain
PfamPF023629.6E-1633122IPR003340B3 DNA binding domain
SMARTSM010191.5E-1433124IPR003340B3 DNA binding domain
PROSITE profilePS508639.601529622IPR003340B3 DNA binding domain
SMARTSM010190.14534622IPR003340B3 DNA binding domain
CDDcd100174.30E-9538609No hitNo description
SuperFamilySSF1019363.73E-10540612IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-8560615IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MVRGRVVRGG RTRRNRETSN RMEKDPSLVT ARFFKIMFGT DYSNVLYLPP KFARTVKHLA  60
GQEIQIEDST GLRWSVTLSH VNGSLAFQKG WPKFFLDHGL KEGEFVVFNY VKGSHFVVQI  120
YGKRACERIN FNNGTCRPNK RSRRGTETVY QDAPIQTTYL NSRDKPSSAT SVASGSEFQT  180
RQTRKLGAKS DHGRLQVLPI PIKMEDPACM VNRDDGHYLG EDRNFLYDLS LFEMERETDD  240
RNKFEKALDT ITIPSPPEVT EEANKFEKAL GTMNAPSEIP EQANMERDDT QMAVIQTNEN  300
NGHSADIPSD KFEEALNIKV APSHTDTVEQ SKTKVDNSEM AVAHKIQVDG HSGEISTDKL  360
EKTLDNKLAL SRTEITEQTK IKGDDTQMRE VHSEQIDDRT ADIFTAKRHS KPSDFSNLKK  420
DISGDASNFQ NGNSHLVASD SESPSICSSK IAGREVKHRC YGSAVSSSVL KDRFGKHAIK  480
KERVELGEEA NGLPEVFGTE EPNMVREYAK MFPPAVKVEP DLYDTSQLVT VCAFSTEVKS  540
LCYLELPIPI PSVRGRRDRA RGKVVYLRDS SGRLWPVLYP DPSPVKALTV NWRNFCEQND  600
IKLGDKCRFQ VEDIMLCIYK VDVIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084041.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084041.10.0uncharacterized protein LOC105166397
TrEMBLA0A2G9HUU51e-149A0A2G9HUU5_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.13e-13B3 family protein