PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011083785.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Dof

Protein Properties

Length: 251aa MW: 26842.1 Da PI: 8.3925

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011083785.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.1e-39	49	107	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++l+cprCdstntkfCyynny+l+qPr+fCk+CrryWt+GGalrnvP+Ggg+rk +s XP_011083785.1 49 PEQLPCPRCDSTNTKFCYYNNYNLTQPRHFCKSCRRYWTRGGALRNVPIGGGTRKASSS 107 6789***************************************************8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-26	47	110	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.6E-33	51	106	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.236	52	106	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	54	90	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MDSLLNTSLS PELITKHHFT PIPQPNTPEV VSDSTHPRLS RYPSRAPEPE QLPCPRCDST 60 NTKFCYYNNY NLTQPRHFCK SCRRYWTRGG ALRNVPIGGG TRKASSSNKR HRIATTPTPP 120 AATTTTSEGQ TRRPDRVASN PGSGLCSGSI QDAPAAKPVT LTPWWSTAST VMGVECGLLP 180 LNGYGLGLAS GLGYGHGVLD WPMEQGAMAV AVESPGCNTW QVGGGGEGGV AEDDYFSWPD 240 LAISTPGKAL K

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011083785.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ047539	2e-56	KJ047539.1 Sesamum indicum clone TilSSR_18740 microsatellite Sesame_18740 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083785.1	0.0	dof zinc finger protein DOF1.6
TrEMBL	A0A2G9HEV8	1e-85	A0A2G9HEV8_9LAMI; Uncharacterized protein
STRING	Migut.C00646.1.p	3e-47	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4532	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	9e-36	DOF zinc finger protein 1