PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011080320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 420aa MW: 46005.2 Da PI: 6.2691 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.9 | 1.5e-12 | 351 | 396 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ k + +++L +Av+YIk+Lq XP_011080320.1 351 SIAERVRRTKISERIRKLQELVPNM----EKQTNTSDMLDLAVDYIKDLQ 396 689*********************6....4679****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.881 | 345 | 395 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.33E-16 | 348 | 409 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.96E-13 | 349 | 400 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.9E-15 | 350 | 408 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-9 | 351 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.5E-13 | 351 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MNNNQQQQQN MQMGSAGLTR YRSAPSSYFA SFLDTPTADG GFGADHLEQL FNPRASSPET 60 QRIFSRFMNG TADTIQENSF SNMTLPSKSQ LNSQFFPPRS KESDPQQQLQ RQQSNDYSSA 120 SQIVYQTHNS GAANSAAMQN SYNRPFDSFS SMKVEGGGAV GGSSLVRHSS SPAGLLANIS 180 IENEFGSVRG IGNFGGGNSA NAEASFSSAS RFKNQMEFSS RLSSSRLMDP ISEIGNNGIG 240 ENSRGPGPLD DDPSNDGDYI PGFTSNSWDD SSVLSDNFLQ ELADNDNKRF SNANVSDDQN 300 NKGGNRPTTQ LSHHLSLPTS STELSAMEKL LQDSVPCKIR AKRGFATHPR SIAERVRRTK 360 ISERIRKLQE LVPNMEKQTN TSDMLDLAVD YIKDLQRQVK TLSDNRAKCS CSAKQESYVD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00646 | PBM | Transfer from LOC_Os08g39630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011080320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080320.1 | 0.0 | transcription factor bHLH130 | ||||
TrEMBL | A0A2G9GI90 | 1e-171 | A0A2G9GI90_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D00568.1.p | 1e-157 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4605 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 3e-48 | bHLH family protein |