PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011079187.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 227aa MW: 25932.9 Da PI: 9.2129 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.9 | 2.8e-06 | 107 | 148 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rr +r+ ++ L++llP++ +K++ a++Le+A +YI+ Lq XP_011079187.1 107 RRRQQQRLSDKTRCLQRLLPWD-----EKMDMATVLEEAYKYIRFLQ 148 23333567788888*******9.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.798 | 98 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-9 | 106 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-8 | 108 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.40E-4 | 121 | 152 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MEDEFQFQIQ PPSLLLSGEA SSALPLVARL RFFGQRCRGN RDPLFAINDG VPAEAPPYNF 60 FSEAASSSLH HQLPGLLSLE LPQNTAVVES PMMNPRIETA QYGKQRRRRQ QQRLSDKTRC 120 LQRLLPWDEK MDMATVLEEA YKYIRFLQAQ VRVLQSMPCE SGGRPRRLHV QLLQVVVNSP 180 VAQTQLYSKG CCLYSVEQLV LLKKNAERKA LYHQMMLESS NPNPFLS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011079187.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020549789.1 | 1e-123 | uncharacterized protein LOC105162763 | ||||
TrEMBL | A0A2G9HBM2 | 7e-86 | A0A2G9HBM2_9LAMI; Uncharacterized protein | ||||
STRING | XP_009790451.1 | 4e-39 | (Nicotiana sylvestris) | ||||
STRING | XP_010109560.1 | 3e-39 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11250 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22100.1 | 1e-17 | bHLH family protein |