PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011078901.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 306aa    MW: 33644.4 Da    PI: 7.7898
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011078901.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055244266223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp C+ +Fs+   L+ H  + H
  XP_011078901.1 244 VCPQCNLRFSTIGALVDHVEKvH 266
                     6*****************99888 PP
2zf-C2H217.21.4e-05278300223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp+C+k F+++ +L+ H  + H
  XP_011078901.1 278 VCPKCSKGFRDPVTLVDHVEReH 300
                     7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.09E-10753No hitNo description
Gene3DG3DSA:4.10.1110.101.7E-81054IPR000058Zinc finger, AN1-type
PfamPF014283.5E-121351IPR000058Zinc finger, AN1-type
SMARTSM001540.00161352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.7E-991147IPR000058Zinc finger, AN1-type
SuperFamilySSF1183107.26E-893142No hitNo description
PfamPF014287.7E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.034101142IPR000058Zinc finger, AN1-type
SMARTSM003550.054243266IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280245266IPR007087Zinc finger, C2H2
SMARTSM003557.2277300IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280279300IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGTPAIPNLG KHCSVDDCRQ IDFLPFTCDC CRQIYCLEHR SYSRHQCIKA KECNVTVVIC  60
PLCAKGVRLI PEEDPNITWE SHVDVECDPS NYDKVTKKRT CPVPGCRGIL TFSNTIKCRD  120
CSVDHCLKHR FGPDHNCAGP KKSEVAFQFM RLLNRSRKEE LNQAPGASSS SWATSFFKAA  180
SSVRATAEAG MAGMARFTPS SVRATAEAGM ARLSVELNQA LGRDGAVQSS TVSHTENATG  240
QIEVCPQCNL RFSTIGALVD HVEKVHDRNG IMNMALDVCP KCSKGFRDPV TLVDHVEREH  300
EGVLKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011078901.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078901.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-109SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A2Z7BVT81e-157A0A2Z7BVT8_9LAMI; Uncharacterized protein
STRINGXP_009765392.11e-143(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53112237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-109C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]