PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011078402.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | YABBY | ||||||||
Protein Properties | Length: 183aa MW: 20739.7 Da PI: 8.91 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 195.6 | 2.2e-60 | 2 | 156 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 + +eq+Cy+ CnfC+ +lavsvP + lf vvtvrCGhC+++ vn+a a q l + + + + ++++ +++++ + +s++ +++ XP_011078402.1 2 DVPEQLCYIPCNFCSIVLAVSVPCNNLFDVVTVRCGHCSNVWGVNMAAAFQCLQPSWQ-----------DVQAAGHTSTEYKVDHLGSSSKWNNK 85 579******************************************9998877655443...........22223322223322222222222232 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + + + p++ v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl XP_011078402.1 86 MAIQPSITHKPEQRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPHIHFGL 156 2233334445555679*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.7E-68 | 4 | 156 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.4E-8 | 91 | 149 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.8E-4 | 103 | 150 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MDVPEQLCYI PCNFCSIVLA VSVPCNNLFD VVTVRCGHCS NVWGVNMAAA FQCLQPSWQD 60 VQAAGHTSTE YKVDHLGSSS KWNNKMAIQP SITHKPEQRI VNRPPEKRQR VPSAYNQFIK 120 EEIQRIKANN PEISHREAFS TAAKNWAHFP HIHFGLMLET NNQAFVNEGS GKHQMRRAAI 180 LKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011078402.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078402.1 | 1e-137 | axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 2e-79 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A2G9GBC8 | 1e-106 | A0A2G9GBC8_9LAMI; Uncharacterized protein | ||||
STRING | VIT_11s0016g05590.t01 | 1e-96 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 7e-82 | YABBY family protein |
Publications ? help Back to Top | |||
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