PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011077666.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ARF | ||||||||
Protein Properties | Length: 1087aa MW: 119933 Da PI: 6.6382 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.5 | 5.2e-23 | 132 | 233 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +++ XP_011077666.1 132 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLVAGDSVLFI--RDE 222 99*****************************96555444..8************************************************..568 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l+++++r+ XP_011077666.1 223 KQQLLLGIRRA 233 8889****997 PP | |||||||
2 | Auxin_resp | 119.1 | 3.4e-39 | 258 | 341 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka+ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ XP_011077666.1 258 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 341 79******************************998669********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.62E-43 | 122 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-41 | 123 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.98E-20 | 131 | 223 | No hit | No description |
PROSITE profile | PS50863 | 12.083 | 132 | 234 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-23 | 132 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-21 | 132 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-34 | 258 | 341 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 27.775 | 975 | 1059 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.1E-6 | 976 | 1060 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.28E-6 | 988 | 1053 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1087 aa Download sequence Send to blast |
MKTPTSGTGT LPGNASAAEG VKKSINGELW QACAGPLVNL PAAGTHVVYF PQGHSEQVAA 60 SMKKDVDAQI PNYPNLPAKL LCLLHNVTLH ADLETDEVYA QMTLQPVPSF DKEALLRSDL 120 SMKANKPQTE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFTMQPPAQ ELVARDLHDN 180 VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL VAGDSVLFIR DEKQQLLLGI RRANRQPPNL 240 SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRASPSE FVIPLAKYYK AVCSNQISLG 300 MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKNSQWRNL QVGWDESTAG ERRNRVSIWE 360 IEPVTAPFFI CPTPPFFRSK RXXXNYYADD DSSDLDSLFR RTMPWLGDEF GLRDPQALPG 420 LSLVQWMNMQ QNSSLSNSMQ PNYVNPLPSS LLQNAAGTDI SRQLGLPGTQ ISQHNNLQFN 480 AQRPNQPVQQ LDQLQKLPSS TLSPLSSITQ PQQQLTDVAQ PPRQSLVGQN LPASQVPSQI 540 LQSQSPIQAQ NVLQQQQSLV NHQLQRNLSQ NLPQQQVLSH SHQQNLMPSQ TPDHLSQQLQ 600 MPDNQIQLQL LQKLHQQQQL LLHQQPGMQQ SSQLTQLQDQ QKQLLDIPPN FPRSTAMSQL 660 MDSSQATSSM HPQSHVTGRE MTGNNSQTNL RFAQPPKQQK LQQSGILSEL PGHVGSTLNX 720 GGPSAVTDDV PSCSTSPSTN NCPNVGQSIT NGRNHRATTM VDEIAQSSVA RLNSGGLEPM 780 SSNSNLVQDL QQNSDVKPSL NISKSQNQGF FATQTYLNGV GTHIDYLDSS SSATSVLSQN 840 DGHIPQNNNS MSFNSQSMLF RDASQDGEAH GDPRNTVAFG ANIDNQLGMP MMPEPLITKN 900 MVGSGKDFSS NISSGGGLLS TYENPKESQA ELSPSMVSQS FGVPDMAFNS IDSTIHDGSF 960 MNTGAWAPPQ IPRMRTYTKV YKRGAVGRSI DITRYSGYDE LKQDLARRFG IEGQLEDRQR 1020 VGWKLVYVDH ENDVLLVGDD PWEEFVTCVR CIKILSPQEV QQMSLDGDFG NSVLPNQACS 1080 SSDNGVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-170 | 22 | 362 | 48 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011077666.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077666.1 | 0.0 | LOW QUALITY PROTEIN: auxin response factor 19-like | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | A0A2G9HCE8 | 0.0 | A0A2G9HCE8_9LAMI; Auxin response factor | ||||
STRING | XP_009762809.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1302 | 24 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |