PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077299.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 267aa    MW: 29207.7 Da    PI: 8.3914
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077299.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00098102124123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+ksF +   L  H  +H
  XP_011077299.1 102 YQCKTCNKSFQSFQALGGHRASH 124
                     9*********9988888887777 PP
2zf-C2H213.50.00021182204123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_011077299.1 182 HECSICGAEFTSGQALGGHMRRH 204
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.5E-9101124No hitNo description
PfamPF139129.8E-13101126IPR007087Zinc finger, C2H2
SMARTSM003550.042102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18102129IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SuperFamilySSF576671.5E-9177204No hitNo description
PfamPF139128.7E-13181205IPR007087Zinc finger, C2H2
SMARTSM003550.01182204IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723182204IPR007087Zinc finger, C2H2
PROSITE patternPS000280184204IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MQAQELEVVM IKGKRSKRPR TPSPLGITMA TSSSTTAAEY GVGFRGGVVS EVSAGSSDSV  60
ELARLYRDEE EEDMANCLIL LAKGRDQKQA AAVNRSPAAE VYQCKTCNKS FQSFQALGGH  120
RASHKKPTKP IIAVDEKKAS SSRDHKQESS PSDGEHDDTT ILSLQIPSRT PSSPNKNKTR  180
VHECSICGAE FTSGQALGGH MRRHRPLPAA SNHGEPQEAK RPRNLLSLDL NLPAPEDHDH  240
HRESKFSFRP TEQVIVFSAS PLVDCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011077299.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077299.10.0zinc finger protein ZAT5
TrEMBLA0A2G9HVE24e-88A0A2G9HVE2_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000098713e-75(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.17e-57C2H2 family protein