PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076954.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family M-type_MADS
Protein Properties Length: 245aa    MW: 26900.9 Da    PI: 9.8798
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076954.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.61.4e-171050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +i n+s r+ tf kR++g++KK +ELS+LC+++++ +++s+
  XP_011076954.1 10 FITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAVVYSP 50
                    89**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.49E-24185IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.694149IPR002100Transcription factor, MADS-box
CDDcd002662.10E-21285No hitNo description
PRINTSPR004042.8E-9323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-191051IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVSELSTLCG IDACAVVYSP YDSQPEVWPD  60
GRGAHRVLAQ FKRMPEMEQS KKMVNQESFI RHRISKAADQ LKKLHKDNRE KEITHLMYQC  120
LTGKGLQGLG AAELNDMGWL LDQNLKEIYK RIEGLKKKAV EAPGNGVEEK PAPLVLDGGM  180
QRAAPPQQWF TECMGNPGDN QQGLGSSFGH GGVGGSGSGG GGEEMILPFS DGSNSAAMWS  240
NVFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFITNDSARKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011076954.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076954.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-58AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A022PV321e-115A0A022PV32_ERYGU; Uncharacterized protein
STRINGMigut.B00884.1.p1e-115(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-60AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]