PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076813.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WRKY
Protein Properties Length: 341aa    MW: 37753.2 Da    PI: 6.1836
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076813.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY893.9e-28166226259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqKe+ gs++prsYYrCt++   +Cp+kk+v+r ++d  ++e+tY+++H+++
  XP_011076813.1 166 EDGYTWRKYGQKEILGSKYPRSYYRCTHQkfyECPAKKQVQRLDDDFFTFEVTYRDNHTCH 226
                     7****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-26164227IPR003657WRKY domain
SuperFamilySSF1182901.06E-24164227IPR003657WRKY domain
SMARTSM007747.0E-36165227IPR003657WRKY domain
PROSITE profilePS5081120.243166228IPR003657WRKY domain
PfamPF031068.6E-25166226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDEGLALVLY GCKLAKDLEQ NLPHLARHPD TLLMSCEDII RVFTNVKERL VSRGQTNVPR  60
QPQELQRLDD DIGVGIQEWL RSGMVVEQEQ PSGLEFVVRG LSGGGDAGRS LSGGTSRDVQ  120
HPLINAPDSN RTSSSSQRQR RRKDEGEKIV KRVPAPQMGN LDLPPEDGYT WRKYGQKEIL  180
GSKYPRSYYR CTHQKFYECP AKKQVQRLDD DFFTFEVTYR DNHTCHMSST APSAAVPVPG  240
PPLPPATTTA VHPPVLPFSS SLPTTHHDWL SMQIFHDLGG VSAGGSSTGA GSSSAPRFPD  300
YQLPVADMAE TMFNSGSTSS NSMDLIFSSM DDKWDSEEKK D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-18166225968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011076813.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076813.10.0WRKY transcription factor 55
TrEMBLA0A022PUP81e-118A0A022PUP8_ERYGU; Uncharacterized protein
STRINGMigut.F00573.1.p1e-119(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92801824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.17e-50WRKY DNA-binding protein 55