PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011072829.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 475aa    MW: 52624.2 Da    PI: 8.711
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011072829.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000494112321
                     ETTTTEEESSHHHHHHHHH CS
         zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                     C+ CgksF ++  L  H++
  XP_011072829.1  94 CKECGKSFQSWKALFGHMK 112
                     ******************7 PP
2zf-C2H212.20.00057390412123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C k+F++   L  H r+H
  XP_011072829.1 390 HECPICFKVFPSGQALGGHKRSH 412
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.97E-8931No hitNo description
SMARTSM003555.7931IPR015880Zinc finger, C2H2-like
PfamPF139120.018931IPR007087Zinc finger, C2H2
PROSITE profilePS501578.871936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576677.97E-887114No hitNo description
PROSITE profilePS501579.9392119IPR007087Zinc finger, C2H2
SMARTSM003550.05192114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
PfamPF139121.5E-794114IPR007087Zinc finger, C2H2
SuperFamilySSF576679.05E-7310332No hitNo description
PROSITE profilePS501579.452310337IPR007087Zinc finger, C2H2
SMARTSM003550.36310332IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-10310334IPR007087Zinc finger, C2H2
PROSITE patternPS000280312332IPR007087Zinc finger, C2H2
SuperFamilySSF576679.05E-7385412No hitNo description
PROSITE profilePS501578.974390412IPR007087Zinc finger, C2H2
SMARTSM003550.074390412IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-11390412IPR007087Zinc finger, C2H2
PROSITE patternPS000280392412IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MEEDQELKHM CKFCCKSFPC GRSLGGHMRS HLMNTSSSSD QDKLPRKKLP PLTKTDVSIK  60
DSGSFGCRLR ENPKRTSKFP KITEKDTLLQ EKLCKECGKS FQSWKALFGH MKCHSVNGKA  120
ANTAEQDSWN GCNDHHRKLI VDSQSDNEAA TPFCRRKRSE RTKRYTSATK SSSSNFSPCV  180
SEIDQQEQEE VALSLILLSR DTGSRAGVNS VLESSSTSSE PLGAKKTDKV VKQTELRTSG  240
EGYFNITSKS GVSTDEFRFE CEVNSPKNLN RKSGVDQFGS DCKKKSSIKR KSIGSHGSEL  300
CQDFEKSSKF MCAICKKAFP SYQALGGHRA SHKKFKGSCA PTTQNSPETE NSLNQSDSTK  360
LSKCTSRESP VDVFAEKIVS DVVGKRSKDH ECPICFKVFP SGQALGGHKR SHLVSDHVMK  420
SSDPPFASAH KQIQETRDFL DLNLPAPVDD ECEDLKPWWI PTGNEHGPLL GLLSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011072829.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072829.10.0zinc finger protein ZAT4-like
TrEMBLA0A2G9HIF71e-148A0A2G9HIF7_9LAMI; Uncharacterized protein
STRINGEOY220001e-115(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-48C2H2-like zinc finger protein