PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011069808.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 422aa MW: 45887.1 Da PI: 6.2545

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011069808.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.5e-11	265	313	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + +k Ka++L + ++Y++sLq XP_011069808.1 265 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAMMLDEIINYVQSLQ 313 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.94E-17	260	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.07E-11	260	317	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-16	262	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.447	262	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.8E-8	265	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.5E-10	268	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MGSEENEERV FQQRGVSSIL NCPSSGMGTN STSDKVSEMA ICSQSMFRSP NGLDPYGSDW 60 DPIVSLSGNL GNSTMVAQNH EFANSHCSVL LENKTTGSSS HLVQFPSDSG LVDLVPKIPS 120 FRSGSLSEML SSFGQIAESG THSNFALKNG VGLRRASTNI ADSQDKFQNS EDRILGASPY 180 GKRKRKEPTE ASAQNAEEEQ QKDPSEDTSV FPKADDGKKQ KSEQNIALNS RSRLAVKQAK 240 DNSSGAEPSK DNYIHVRAKR GQATNSHSLA ERVRRERISE RMRLLQELVP GCNKITGKAM 300 MLDEIINYVQ SLQQQVEFLS MKLATVNPEL NVDIDRILSE DILQLRGSNA TGLGIAPGLS 360 LSHSLPAYTQ GTFNGGPGPT PPFHPIPQHL WNNELQGILQ MGFDPDSSIS RLGPNGPSKM 420 EL

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MGSEENEERV FQQRGVSSIL NCPSSGMGTN STSDKVSEMA ICSQSMFRSP NGLDPYGSDW  60
DPIVSLSGNL GNSTMVAQNH EFANSHCSVL LENKTTGSSS HLVQFPSDSG LVDLVPKIPS  120
FRSGSLSEML SSFGQIAESG THSNFALKNG VGLRRASTNI ADSQDKFQNS EDRILGASPY  180
GKRKRKEPTE ASAQNAEEEQ QKDPSEDTSV FPKADDGKKQ KSEQNIALNS RSRLAVKQAK  240
DNSSGAEPSK DNYIHVRAKR GQATNSHSLA ERVRRERISE RMRLLQELVP GCNKITGKAM  300
MLDEIINYVQ SLQQQVEFLS MKLATVNPEL NVDIDRILSE DILQLRGSNA TGLGIAPGLS  360
LSHSLPAYTQ GTFNGGPGPT PPFHPIPQHL WNNELQGILQ MGFDPDSSIS RLGPNGPSKM  420
EL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011069808.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011069808.1	0.0	transcription factor bHLH74
TrEMBL	A3FM28	0.0	A3FM28_SESIN; Basic helix-loop-helix protein
STRING	EOY15650	1e-149	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5250	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	6e-62	bHLH family protein