PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010943745.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 239aa MW: 27277.7 Da PI: 9.2418 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 149.4 | 1.8e-46 | 14 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yL++k+ + +l++ +vi+e+d+ k++PwdLp ++e+e yfF r+ ky +gkr +rat sgyWkatg+dk+++++ XP_010943745.1 14 LPPGFRFHPTDEELVVHYLTRKAFSFPLPA-TVIPEIDLGKFDPWDLP---GGSEEERYFFNLREAKYLNGKRFKRATMSGYWKATGRDKPIIAS 104 79****************************.99***************...4578899*********************************9988 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++lvg kk Lvfy+g+ p+++ tdW+mheyrl XP_010943745.1 105 rCNQLVGWKKDLVFYRGKPPHASPTDWIMHEYRL 138 68889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-53 | 10 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.183 | 14 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-24 | 15 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MEKPDFIKYG VQKLPPGFRF HPTDEELVVH YLTRKAFSFP LPATVIPEID LGKFDPWDLP 60 GGSEEERYFF NLREAKYLNG KRFKRATMSG YWKATGRDKP IIASRCNQLV GWKKDLVFYR 120 GKPPHASPTD WIMHEYRLAA TETSASGFSQ RKFSAHSSMA HTKEWVVCRI FRKRRATRMD 180 AEITPYYNYS RIRSNIEHID PDASVSSSSS SSSCVTDLSE DGEEGSSNSM ASSPNGREV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-45 | 14 | 178 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-45 | 14 | 178 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-45 | 14 | 178 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-45 | 14 | 178 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
4dul_A | 9e-45 | 14 | 178 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 9e-45 | 14 | 178 | 17 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010943745.1 | 1e-180 | NAC domain-containing protein 83 | ||||
Swissprot | Q9FY93 | 4e-71 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A2H3XYT9 | 1e-141 | A0A2H3XYT9_PHODC; NAC domain-containing protein 83-like isoform X2 | ||||
STRING | XP_008790722.1 | 1e-137 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6317 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 6e-73 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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