PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940945.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 448aa    MW: 47558 Da    PI: 7.0478
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940945.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.1e-13270315454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YIk+L
  XP_010940945.1 270 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLADAVAYIKEL 315
                     799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-3438200IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.75E-18264330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.168266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.49E-15269319No hitNo description
Gene3DG3DSA:4.10.280.106.2E-18270333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10270315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-16272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEELISPSSS CSPPHLPPLF SAPTTHHAAA AAAAAPNLQH RLQYLLHARS EWWAYAIFWR  60
AAPDHHLLSF GEGHFRGVRD TGPRGSCGGG GGGGGGIHAL LSDDAGPTDG DEAEWFYVVS  120
LSRSFVAGDP AVPARAYGSL APVWLTGAHA LQSCGCDRAR EAQLHGIETL VCVPLPGGVL  180
ELGSSDIIGE NWALVQQARA ILSAPDDAIV GPAVPALPPV VKKEAGAGVT GLSSSVDSEH  240
SDSEGLLMME RRRPKKRGRK PGTGRETPVN HVEAERQRRE KLNHRFYALR SVVPNVSRMD  300
KASLLADAVA YIKELRAKVD ELETEAKRVK KEVIVDQGVG GAATTTTTTT TTTTMSSVVS  360
CGGGGPATME LEVKMLGPDA LIRVHSENLS HPTAKLMSAL RDLEVHVHHA SVSSVKEVMV  420
QDVVVRVPYA LQFSDGLRAA LLGKLEKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-27264333271Transcription factor MYC2
5gnj_B1e-27264333271Transcription factor MYC2
5gnj_E1e-27264333271Transcription factor MYC2
5gnj_F1e-27264333271Transcription factor MYC2
5gnj_G1e-27264333271Transcription factor MYC2
5gnj_I1e-27264333271Transcription factor MYC2
5gnj_M1e-27264333271Transcription factor MYC2
5gnj_N1e-27264333271Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251259RRPKKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940945.10.0transcription factor MYC4-like
TrEMBLA0A2H3Z8G30.0A0A2H3Z8G3_PHODC; transcription factor MYC4-like
STRINGXP_008810069.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.12e-41bHLH family protein