PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939727.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ZF-HD
Protein Properties Length: 281aa    MW: 28838.9 Da    PI: 7.9465
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939727.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.92.1e-3272125559
     ZF-HD_dimer   5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                     rY+eClkNhA+s+GghavDGCgEfm++ geegt +al+CaACgCHRnFHR+eve 
  XP_010939727.1  72 RYRECLKNHAVSIGGHAVDGCGEFMAA-GEEGTLDALRCAACGCHRNFHRKEVEG 125
                     8*************************9.999*********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.4E-3072123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.9E-3072123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2272124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152328.12173122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.99E-20208279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-32210280IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-25218274IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDFDDHDDPE EEIGLPVGSG YEPPLGNSGR GAAGGGKVAG GGGGGGEGGM VSAGAAAGSS  60
NRKVSGGGGG GRYRECLKNH AVSIGGHAVD GCGEFMAAGE EGTLDALRCA ACGCHRNFHR  120
KEVEGASTVG AGAIGAEYHP QFSPYYRTPA AYLHPHHHMA AAAAAAAQQQ HRPPPLALPS  180
TSGGGGHSRD DQEDISNPMI GGGGIGVSGG GGASGSGKKR FRTKFTQEQK DKMLAFAERV  240
GWRIQKHDEA AVQQFCNEAG IKRHVLKVWM HNNKHTLGKK P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-282192761875ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13442GGKVAGGGG
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939727.10.0zinc-finger homeodomain protein 2
SwissprotA2Z2595e-95ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A2H3ZDR01e-146A0A2H3ZDR0_PHODC; zinc-finger homeodomain protein 2-like
STRINGXP_008812231.11e-147(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-63homeobox protein 22