PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010939557.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 258aa MW: 27977.9 Da PI: 7.5064 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 54.9 | 1.7e-17 | 232 | 258 | 2 | 28 |
--SS-EEEEEEE--TT-SS-EEEEEE- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCt 28 +Dgy+WrKYGqK vk+s+fprsYYrCt XP_010939557.1 232 EDGYRWRKYGQKAVKNSPFPRSYYRCT 258 8*************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.4E-18 | 216 | 258 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-15 | 223 | 258 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.441 | 226 | 258 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.8E-6 | 231 | 258 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-12 | 232 | 258 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MRSSLQGEEE TREASIDRRH VGGSNAKPMP QLQKIRTKEK KRNRNPYLFI SPPILRLHLS 60 SPDAPESRLE SPPCRPIVGP TDGGQNRAPR ASDASGAPGW PFAGHGSGIS SLDELCGGER 120 EEASILSEFG WSIPMDSGTI GEDDGFSGFG LEGAPGPSEA VVAPPESRSD QPTAALPARS 180 GDAVSSSSSE EPPPEADEKP AETANKSTKK GQKRSRQPRF AFMTKSEIDH LEDGYRWRKY 240 GQKAVKNSPF PRSYYRCT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010911418.2 | 1e-121 | probable WRKY transcription factor 57 | ||||
Refseq | XP_019703379.1 | 1e-121 | probable WRKY transcription factor 57 | ||||
TrEMBL | A0A2H3X1Q9 | 3e-75 | A0A2H3X1Q9_PHODC; probable WRKY transcription factor 57 isoform X2 | ||||
STRING | XP_008776993.1 | 8e-73 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2125 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69310.2 | 4e-28 | WRKY DNA-binding protein 57 |