PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010939501.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 289aa MW: 30593 Da PI: 8.6002 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.7 | 1.2e-32 | 36 | 91 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 + Y+eClkNhAa+lGgha+DGCgEfmps+ ++ ++++lkCaACgCHRnFHRr + XP_010939501.1 36 DFLYRECLKNHAARLGGHALDGCGEFMPSPAANhVDPTSLKCAACGCHRNFHRRLP 91 578***************************99999******************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.9E-27 | 38 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.4E-30 | 39 | 89 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-21 | 39 | 89 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.032 | 39 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 9.56E-16 | 170 | 238 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-27 | 175 | 239 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-22 | 180 | 236 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MDPSPKISGP DTKPRTFSFS NGGLKRHHHR SLPAADFLYR ECLKNHAARL GGHALDGCGE 60 FMPSPAANHV DPTSLKCAAC GCHRNFHRRL PKPLLLHHHD DGGGLEGGDE MDGGHDEDDI 120 NGRIEEEYGS ADGRRRCRSS ASPPPYSSAP HMLLALSSGL PGAPFPGRAV GPPAAAALPR 180 KRFRTKFSPE QKERMHELSE RLGWRMQKRD KGLVEEWCRE IGVGKGVFKV WMHNNKHAFS 240 GFAGRGEAGG GSGSGGGVGG GGGGCRDGGG IEGSGNDSGG HNSHVSSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 2e-19 | 180 | 238 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939501.1 | 0.0 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q6ER21 | 5e-65 | ZHD9_ORYSJ; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A2H3YRK9 | 1e-125 | A0A2H3YRK9_PHODC; zinc-finger homeodomain protein 9-like | ||||
STRING | XP_008802616.1 | 1e-125 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 1e-46 | zinc finger homeodomain 1 |