PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010938278.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | WRKY | ||||||||
Protein Properties | Length: 385aa MW: 41281.7 Da PI: 4.9397 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 83.4 | 2.2e-26 | 206 | 266 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqKe+ gs+fprsYYrCt++ gC++kk+v+r +edp + ei+Y g+H ++ XP_010938278.1 206 DDGYTWRKYGQKEILGSRFPRSYYRCTHKsyyGCEAKKQVQRLDEDPYTYEIKYCGNHSCH 266 8***************************99999*************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-25 | 200 | 266 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-23 | 204 | 266 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.8E-34 | 205 | 267 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-23 | 206 | 266 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.505 | 206 | 268 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MDDILNQIHH ACELARELET NLPHFVDNPP LILRSCEEVF GALNKAIHGL RSLYAPHYGT 60 QMFSGEPSGS SSDIRAGEGS SHGGSYMQAM NLLQGPSMEE DNPLPGRGLP ENETGMLDLR 120 QLGLEIQGMM EIGGGSGCSG AAEANVEGFG RGGGEAPAAA MEGSSGSGKR PAGPLTQRSS 180 RRRRDTDGTI VRVPALRTGN MELPPDDGYT WRKYGQKEIL GSRFPRSYYR CTHKSYYGCE 240 AKKQVQRLDE DPYTYEIKYC GNHSCHTSIT PLLISSMAPT TTTNTNNPQG EAPMPEATAP 300 PPSPPPTSTQ LEIWFSRGFE HGQRETLPLI APHGGEGSST QAGPSQMQGG RDGDCPVADL 360 ADAMFNSGSS GSSMDAIFSE PKDDN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-20 | 206 | 265 | 9 | 68 | OsWRKY45 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010938278.3 | 0.0 | WRKY transcription factor 55 | ||||
TrEMBL | A0A2H3X578 | 1e-140 | A0A2H3X578_PHODC; WRKY transcription factor 55-like | ||||
STRING | XP_008782780.1 | 1e-166 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9796 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 1e-37 | WRKY DNA-binding protein 55 |