PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010938278.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 385aa    MW: 41281.7 Da    PI: 4.9397
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010938278.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.42.2e-26206266259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgy+WrKYGqKe+ gs+fprsYYrCt++   gC++kk+v+r +edp + ei+Y g+H ++
  XP_010938278.1 206 DDGYTWRKYGQKEILGSRFPRSYYRCTHKsyyGCEAKKQVQRLDEDPYTYEIKYCGNHSCH 266
                     8***************************99999*************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-25200266IPR003657WRKY domain
SuperFamilySSF1182901.31E-23204266IPR003657WRKY domain
SMARTSM007746.8E-34205267IPR003657WRKY domain
PfamPF031061.2E-23206266IPR003657WRKY domain
PROSITE profilePS5081121.505206268IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDDILNQIHH ACELARELET NLPHFVDNPP LILRSCEEVF GALNKAIHGL RSLYAPHYGT  60
QMFSGEPSGS SSDIRAGEGS SHGGSYMQAM NLLQGPSMEE DNPLPGRGLP ENETGMLDLR  120
QLGLEIQGMM EIGGGSGCSG AAEANVEGFG RGGGEAPAAA MEGSSGSGKR PAGPLTQRSS  180
RRRRDTDGTI VRVPALRTGN MELPPDDGYT WRKYGQKEIL GSRFPRSYYR CTHKSYYGCE  240
AKKQVQRLDE DPYTYEIKYC GNHSCHTSIT PLLISSMAPT TTTNTNNPQG EAPMPEATAP  300
PPSPPPTSTQ LEIWFSRGFE HGQRETLPLI APHGGEGSST QAGPSQMQGG RDGDCPVADL  360
ADAMFNSGSS GSSMDAIFSE PKDDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20206265968OsWRKY45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938278.30.0WRKY transcription factor 55
TrEMBLA0A2H3X5781e-140A0A2H3X578_PHODC; WRKY transcription factor 55-like
STRINGXP_008782780.11e-166(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-37WRKY DNA-binding protein 55