PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010937854.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 267aa    MW: 32138.9 Da    PI: 5.9371
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010937854.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.21.4e-2538119186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++e+++ +++r e++ ++ ++k++kplW+++s++++++gf+r+p+qCk+kw+nl +r+k  +++e++    ss+++p++++++
  XP_010937854.1  38 QWSHDETKEFLAIRAELDGTFMETKRNKPLWQAISARLEHKGFNRTPEQCKSKWKNLVTRFKGSEATEGE----SSRQFPFYEEMR 119
                     7********************************************************************8....5889******96 PP

2Myb_DNA-binding24.37e-083894347
                     SS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.........tWktIartmg...kgRtlkqcksrwqky 47
                      W+ +E + ++   ++l g           W +I++++     +Rt++qcks+w ++
   XP_010937854.1 38 QWSHDETKEFLAIRAELDGTfmetkrnkpLWQAISARLEhkgFNRTPEQCKSKWKNL 94
                     6*****************99********************9989***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.3513195IPR017877Myb-like domain
SMARTSM007172.0E-63597IPR001005SANT/Myb domain
CDDcd122031.70E-2237102No hitNo description
SuperFamilySSF466891.4E-538117IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-53896IPR009057Homeodomain-like
PfamPF138372.2E-2138120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MELHHLISPY YLNVNPPPES GDRDRDRDRD RDRDRFPQWS HDETKEFLAI RAELDGTFME  60
TKRNKPLWQA ISARLEHKGF NRTPEQCKSK WKNLVTRFKG SEATEGESSR QFPFYEEMRM  120
IFSERMEKLL ALSKDKGKGV QVQGEEWGEA EEEEQEEEKL GESKKKRKVE RKRGSEGELE  180
NALREFARRQ LEMEARWIEA AEAREAERRA KEEEWRRAME ALEEERRVME TRWREREEQR  240
REREEARAER RDALVTALLA KLRKEGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A2e-1539117786DNA binding protein GT-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12434RDRDRDRDRDR
2163168KKKRKV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937854.10.0trihelix transcription factor GT-3b
SwissprotO804501e-51TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A3Q0I3A72e-93A0A3Q0I3A7_PHODC; trihelix transcription factor GT-3b
STRINGXP_008789108.15e-89(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-38Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]