PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010937854.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | Trihelix | ||||||||
Protein Properties | Length: 267aa MW: 32138.9 Da PI: 5.9371 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 81.2 | 1.4e-25 | 38 | 119 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++e+++ +++r e++ ++ ++k++kplW+++s++++++gf+r+p+qCk+kw+nl +r+k +++e++ ss+++p++++++ XP_010937854.1 38 QWSHDETKEFLAIRAELDGTFMETKRNKPLWQAISARLEHKGFNRTPEQCKSKWKNLVTRFKGSEATEGE----SSRQFPFYEEMR 119 7********************************************************************8....5889******96 PP | |||||||
2 | Myb_DNA-binding | 24.3 | 7e-08 | 38 | 94 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.........tWktIartmg...kgRtlkqcksrwqky 47 W+ +E + ++ ++l g W +I++++ +Rt++qcks+w ++ XP_010937854.1 38 QWSHDETKEFLAIRAELDGTfmetkrnkpLWQAISARLEhkgFNRTPEQCKSKWKNL 94 6*****************99********************9989***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.351 | 31 | 95 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.0E-6 | 35 | 97 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.70E-22 | 37 | 102 | No hit | No description |
SuperFamily | SSF46689 | 1.4E-5 | 38 | 117 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.4E-5 | 38 | 96 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.2E-21 | 38 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MELHHLISPY YLNVNPPPES GDRDRDRDRD RDRDRFPQWS HDETKEFLAI RAELDGTFME 60 TKRNKPLWQA ISARLEHKGF NRTPEQCKSK WKNLVTRFKG SEATEGESSR QFPFYEEMRM 120 IFSERMEKLL ALSKDKGKGV QVQGEEWGEA EEEEQEEEKL GESKKKRKVE RKRGSEGELE 180 NALREFARRQ LEMEARWIEA AEAREAERRA KEEEWRRAME ALEEERRVME TRWREREEQR 240 REREEARAER RDALVTALLA KLRKEGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ebi_A | 2e-15 | 39 | 117 | 7 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 34 | RDRDRDRDRDR |
2 | 163 | 168 | KKKRKV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010937854.1 | 0.0 | trihelix transcription factor GT-3b | ||||
Swissprot | O80450 | 1e-51 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | A0A3Q0I3A7 | 2e-93 | A0A3Q0I3A7_PHODC; trihelix transcription factor GT-3b | ||||
STRING | XP_008789108.1 | 5e-89 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12595 | 31 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 1e-38 | Trihelix family protein |
Publications ? help Back to Top | |||
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