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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010936336.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C2H2 | ||||||||
Protein Properties | Length: 498aa MW: 54756.8 Da PI: 7.7019 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 84 | 102 | 3 | 21 |
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C++Cgk+F+++ +L H+r XP_010936336.1 84 CKKCGKVFPSWKSLFGHMR 102 ******************8 PP | |||||||
2 | zf-C2H2 | 16.5 | 2.3e-05 | 407 | 429 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cgk+Fs+ L H r+H XP_010936336.1 407 HECPICGKVFSSGQALGGHKRSH 429 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 3.4 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.099 | 9 | 36 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.5E-6 | 9 | 32 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.76E-8 | 9 | 31 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 10 | 31 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.76E-8 | 77 | 104 | No hit | No description |
SMART | SM00355 | 0.02 | 82 | 104 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.764 | 82 | 109 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.6E-7 | 84 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 84 | 104 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.95E-9 | 332 | 355 | No hit | No description |
Pfam | PF13912 | 4.0E-11 | 332 | 357 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.31 | 333 | 355 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.847 | 333 | 360 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 335 | 355 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.95E-9 | 402 | 429 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.6E-5 | 405 | 429 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.005 | 407 | 429 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.0E-12 | 407 | 429 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.72 | 407 | 429 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 409 | 429 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MERDQQLKHC CKVCRKSFPC GRSLGGHMRS HLALNSLTEA EERLQSSRSS IGVGAGYGLR 60 ENPKKTWRLS DSGGDRSPRQ AKLCKKCGKV FPSWKSLFGH MRCHQEKSHH NLEEGEEQDK 120 ELEEQEGSWS AGGQSDNETL IPRRRRRSRQ VASIPGSLSP VLESKKEQEN VALSLMMLSS 180 DTGFWSGISP VAESSDKNSV VLEDLGSEGD EIGKAKKRSE FIASRNGDKG DGLKKMESDV 240 SNDDDNGFVK DDEFKKPKAY ASDTDEFEYS YEASRKGSLE KKDLNCGLAE LGRKTRSDQW 300 HSVVGKYSKL GSRSEIGVSN GEFSKVSLKR GRYECATCNK FFPSYQALGG HRASHKRIKG 360 CFASRTEGSE NSLETDASIE PAQFEESIHK NVGIDASSEA SKKVKSHECP ICGKVFSSGQ 420 ALGGHKRSHL VASSDGGGLT NQAIVIQQQP PGLLDLLDLN LPAPTDEGSN NTDGNLKLKS 480 WWVGRNHEHE SLSDLISN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010936336.1 | 0.0 | zinc finger protein ZAT1 | ||||
TrEMBL | A0A3Q0ICF1 | 0.0 | A0A3Q0ICF1_PHODC; zinc finger protein ZAT1-like | ||||
STRING | XP_008805104.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17195 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 2e-42 | C2H2-like zinc finger protein |