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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_010932233.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 295aa MW: 31276.3 Da PI: 7.4728 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 13.3 | 0.00024 | 107 | 129 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C + F ++ L H++ H
XP_010932233.1 107 FSCNYCQRKFYSSQALGGHQNAH 129
89*****************9988 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 1.41E-6 | 104 | 134 | No hit | No description |
| PROSITE profile | PS50157 | 11.427 | 107 | 134 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 109 | 129 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 295 aa Download sequence Send to blast |
MPSPPLLINR GGISKGQTHP PLMQASLMSS HRNMEEERGR EEREDAPVVV EEGETKEIML 60 VDLESDGGDG STPAAPPMLE LNLLESFGSV EAERAPVAVP ESEPKVFSCN YCQRKFYSSQ 120 ALGGHQNAHK RERTLAKRGA AHHHGGFVGD HAGGGVGGGA AYRFPPSMAS LPLHGSYPGS 180 HLGIQMHSMV HKPYIGTMTT AAATMTSMAA AGLLYGRQGA WSRPPPIVNR QPAIGRLLTE 240 EFYGAARAPA ARFDESAKAV VGGFRWSGGA GGAAGGNHLN ARQEELPKLD LSLKL |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010932233.1 | 0.0 | zinc finger protein 1 | ||||
| TrEMBL | A0A2H3WYC2 | 1e-134 | A0A2H3WYC2_PHODC; zinc finger protein 1-like | ||||
| STRING | XP_008775541.1 | 1e-117 | (Phoenix dactylifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP183 | 36 | 274 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G80730.1 | 2e-31 | zinc-finger protein 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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