PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931005.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 495aa    MW: 55102.8 Da    PI: 4.9769
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931005.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS253.11e-771144702373
            GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                     ++lLl+ Aeav++++ + a+ +Larl +l   +  d +p+ +la yf+++L+ r ++ +   ++ ++p ++    +s+ ++a+++++e+sP++kf
  XP_010931005.1 114 TDLLLAGAEAVETENWHVASIALARLDHLlltQETDTNPLSQLACYFAQGLRPRTNDLG---ANGVSPVRS---MVSDGMSAYQMLQELSPYVKF 202
                     689*************************9874455558******************922...223334444...4999***************** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +h+taNqaIlea+eg+++vHi+Dfd+++G+QWp+L+  +asR++   sl iT++++  +g+ e +++tg+rL +fA+++g+p++f+ l++++  d
  XP_010931005.1 203 GHFTANQAILEATEGDREVHIVDFDVMEGIQWPPLMVDFASRAGT--SLWITALVE--AGNVEVVHRTGRRLVEFADSIGLPLRFDWLYVDNEGD 293
                     ******************************************877..9********..67****************************9997777 PP

            GRAS 189 leleeLrvkpgE.alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse...sFlerflealeyysalfdsl.eaklpr 277
                     l  e+  v+ gE +l++n++++  + +++s ++    +++L  v++lsPk+vv+ve+e+   +++   sF+e f+eal+++sa++dsl  + ++ 
  XP_010931005.1 294 L--ER--VEAGEgSLIINCMVNQLERPSRSFQSL---NALLGGVRKLSPKLVVLVEEELFSfGKSpfkSFVEFFCEALHHFSAILDSLkGSFVGG 381
                     7..44..4554438999**998887775555555...59*******************6665666555899*****************6666666 PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                          + vEre+lg++i++ v +  +e       ++ W   ++   GF+++pls+ +++qak l+  ++ +gy v++e+g l l+Wk+rpL++vS
  XP_010931005.1 382 YRMGLRLVEREMLGPRIMESVGHFLRE-------MKGWGGGFRGlEGFRAIPLSSCNVSQAKFLVGLFS-KGYGVQHERGRLSLCWKSRPLTTVS 468
                     6688899**************999988.......889****98758***********************.9************************ PP

            GRAS 372 aW 373
                      W
  XP_010931005.1 469 IW 470
                     ** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.22787452IPR005202Transcription factor GRAS
PfamPF035143.6E-75114470IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MEASLHPPLL SIPMEYEPSY GQCSLQANED IIFPLIMRDV FPENAQMDAT VYVNGENFNT  60
GFPGMSCVNE PLVHDSFMDL EKFRPLGHDG VCHEYSSQHL VAIQGELMEE NSLTDLLLAG  120
AEAVETENWH VASIALARLD HLLLTQETDT NPLSQLACYF AQGLRPRTND LGANGVSPVR  180
SMVSDGMSAY QMLQELSPYV KFGHFTANQA ILEATEGDRE VHIVDFDVME GIQWPPLMVD  240
FASRAGTSLW ITALVEAGNV EVVHRTGRRL VEFADSIGLP LRFDWLYVDN EGDLERVEAG  300
EGSLIINCMV NQLERPSRSF QSLNALLGGV RKLSPKLVVL VEEELFSFGK SPFKSFVEFF  360
CEALHHFSAI LDSLKGSFVG GYRMGLRLVE REMLGPRIME SVGHFLREMK GWGGGFRGLE  420
GFRAIPLSSC NVSQAKFLVG LFSKGYGVQH ERGRLSLCWK SRPLTTVSIW VHEGIFGGSR  480
DISVSNPRHG FSWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4012147127379Protein SCARECROW
5b3h_A8e-4112147126378Protein SCARECROW
5b3h_D8e-4112147126378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029122235.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2H3XC840.0A0A2H3XC84_PHODC; nodulation-signaling pathway 2 protein-like
STRINGXP_008781634.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-47GRAS family protein