PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930979.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 441aa    MW: 51062.3 Da    PI: 6.722
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930979.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.89.3e-26119216186
        trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                     +Wt+ +v++Li+a+++++e+  ++            +kk++W+++sk+m+erg+ +sp+qC++k+++lnkryk+++++ +++ +++++++ +++d
  XP_010930979.1 119 KWTRAMVRLLITAVSYVGEDAMSEYnsggrrkyailQKKGKWKAISKVMAERGCYVSPQQCEDKFNDLNKRYKRLTDILGRGtSCRVVENPALLD 213
                     7**************999888764234566778888**********************************************669********** PP

        trihelix  84 qle 86 
                     q++
  XP_010930979.1 214 QMD 216
                     *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.9E-22117241No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEGNLPTSNM IPYGVLDLQG SMHMHHQHHP QASFHHHQQQ PSGTQHQGSM IHPPMHEVFQ  60
LTMQDCNHQP AVPVTDYNKG EHGKTSMSDD DDLNFMEDGA DGQNEAGNGK KGFPWQRMKW  120
TRAMVRLLIT AVSYVGEDAM SEYNSGGRRK YAILQKKGKW KAISKVMAER GCYVSPQQCE  180
DKFNDLNKRY KRLTDILGRG TSCRVVENPA LLDQMDISDK LKEDARKILS SKHLFYEEMC  240
SYHNGNRLNL PHDPALQRSL QLVLRSREEH DTRRAVHEDV DEDDQSADTD NEEDDAEEHT  300
VLHGDVGGSC FPKRMKHMVD HEEVGFGNPS GSQDCTRRPY PQSMSVDMNQ VLPEGSTVAW  360
GDKNLISSHS LQMEEQRLKI QLQMLELERQ RFKWQRFSKK KDRELNKMRM ENERMKLENE  420
RLALELKRKE FEIDLNSKRN H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930979.10.0uncharacterized protein LOC105052003
TrEMBLA0A2H3XBQ30.0A0A2H3XBQ3_PHODC; uncharacterized protein LOC103701210 isoform X1
STRINGXP_008781412.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-123sequence-specific DNA binding transcription factors