PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929607.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 245aa    MW: 27732.4 Da    PI: 9.3616
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929607.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.14.6e-46141381128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+e+d+ k++Pwd+     + ++e yfF  r+ ky++g+r+nra   gyWkatgkdk+++++
  XP_010929607.1  14 LPPGFRFHPTDEELVVQYLKRKVFSCPLPA-SIIPEIDLGKYNPWDFSG---GCKQERYFFYLREAKYRNGHRSNRASGCGYWKATGKDKAIVAS 104
                     79****************************.89**************83...346799**********************************998 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk+Lvfy+g+ p  ++tdW+mheyrl
  XP_010929607.1 105 sSNQVVGMKKVLVFYHGKPPGVSRTDWIMHEYRL 138
                     67788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-557173IPR003441NAC domain
PROSITE profilePS5100553.26514173IPR003441NAC domain
PfamPF023651.2E-2515138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDKPSFMRQG VLRLPPGFRF HPTDEELVVQ YLKRKVFSCP LPASIIPEID LGKYNPWDFS  60
GGCKQERYFF YLREAKYRNG HRSNRASGCG YWKATGKDKA IVASSSNQVV GMKKVLVFYH  120
GKPPGVSRTD WIMHEYRLAG TETRACVFPQ RKNSTHSSMV PTKDWVLCRI FKKKRANTMD  180
VDAEEYREEN QIRNGGIGFI DFMGLQHRDQ QPSLASSSES SCVTEPSDGS SSGDETSCSN  240
GRPLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-471217418169NAC domain-containing protein 19
3swm_B4e-471217418169NAC domain-containing protein 19
3swm_C4e-471217418169NAC domain-containing protein 19
3swm_D4e-471217418169NAC domain-containing protein 19
3swp_A4e-471217418169NAC domain-containing protein 19
3swp_B4e-471217418169NAC domain-containing protein 19
3swp_C4e-471217418169NAC domain-containing protein 19
3swp_D4e-471217418169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929607.10.0NAC domain-containing protein 83
SwissprotQ9FY931e-75NAC83_ARATH; NAC domain-containing protein 83
TrEMBLB3TLL00.0B3TLL0_ELAGV; ANAC083 transcription factor
STRINGXP_008791093.11e-156(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-77NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Low ET, et al.
    Oil palm (Elaeis guineensis Jacq.) tissue culture ESTs: identifying genes associated with callogenesis and embryogenesis.
    BMC Plant Biol., 2008. 8: p. 62
    [PMID:18507865]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]