PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010928945.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 903aa MW: 99669.3 Da PI: 5.0584 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.2 | 9.4e-06 | 311 | 331 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ff + G+C G++C+F H XP_010928945.1 311 ICAFFKQ-GWCIKGNSCSFLHL 331 5998888.*************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 4.71E-6 | 306 | 330 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.122 | 306 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-4 | 311 | 334 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 903 aa Download sequence Send to blast |
MPKRPAPGFD STPERSAMAD SPPGAGDGEE SPEEERYIDE EEEEVEEMVE EEEDDEEGEE 60 GSQGEGAEDE EEVAEVEGEE GSDSSDAEAH PGEDAHDASE KVESAGNGKD LKSVSSLHKR 120 SCIDQSLAIH GRDGVGDLTA SDSSPKLLAV DSEQGSAIND RDTRSAIQDK HIMSSEKSKF 180 FISHLAGRDI EVLLEKETSI EASKDGRRYN FETHGNYKSN LSSDCSISGK DTRSFHVNED 240 KPVVQSMIKS GSRYGKMDGA IEKDAPNPYT KINLHPPEDF GVSSIHTPQR RRRSSSPGAP 300 FEISKKRPAI ICAFFKQGWC IKGNSCSFLH LKEEDARSSQ WAKENIAESN TMYDSMDHTG 360 SREEAQRLKP STSHEPLDSL NFEKPSKLDL QRALVRAYGG EGSGFTQFHD EYDKHSSKIS 420 AEEHFRYDIS GSDRALNLPV NELRKASLVQ EGYQRPIGVS PYLHPMDERH SASGEFLSRR 480 YLDEGKLHQE MPKEEFLNDA TFSRASPLSR NPLILESGYY SEQSSAAAGL YQNSNNSYSH 540 GKMTEDVAIG YQQSRFPPPD PKYCSYSLSS SSNLRFDNSF QPLSGSPPVQ TLAQTGTSST 600 SRSMPLSAEH FDSNRTFNFN RGYYGSRSAS LPSNSSPYYS RSEIGSNMQQ DILADVPPSA 660 GSKIQVNSWE PSERFQSSFC APASKPSPGS QYDPLIDSIE HPKAGNVTIQ TSPITIIHNV 720 SSQHISGHAP VYSSQKPLNS PHHSTEDIFD ESALAHQFNG HIAPLPATGP DTVDAGKSSV 780 PKDEKCWVPH VTDGENINVV DLGNNTRNQV DKARNDKESK ALRIFRVALV DFVKELVKPF 840 WREGHLSKDA HKMIVKKAVE KVIGSLQPHQ IPSTAESINQ YLSLSQTKLL KLVEAYVDKY 900 AKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010928945.1 | 0.0 | zinc finger CCCH domain-containing protein 36 | ||||
TrEMBL | A0A2H3XWD4 | 0.0 | A0A2H3XWD4_PHODC; zinc finger CCCH domain-containing protein 36-like | ||||
STRING | XP_008789750.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11010 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 8e-29 | C3H family protein |