PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010928195.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C2H2 | ||||||||
Protein Properties | Length: 213aa MW: 23484.2 Da PI: 6.7887 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.3e-05 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+k F+++ L H +H XP_010928195.1 84 YRCNICSKYFPTHQALGGHTASH 106 9**************99998887 PP | |||||||
2 | zf-C2H2 | 11.1 | 0.0013 | 144 | 166 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C +F++ L H r+H XP_010928195.1 144 HRCTICQATFPTGQALGGHKRKH 166 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.046 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.62E-6 | 84 | 106 | No hit | No description |
Pfam | PF13912 | 2.6E-8 | 84 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.91 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.62E-6 | 139 | 166 | No hit | No description |
SMART | SM00355 | 0.051 | 144 | 166 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.6E-11 | 144 | 167 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 146 | 166 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MSRSTNLWTG GLQYRKKTKE MDEKNIEGDA MHAENVDGLQ DECIDVGASS REENVQKKKK 60 KKKKIKDLES VHEARPPTQD SSGYRCNICS KYFPTHQALG GHTASHNKKN NSEEVDEAED 120 GNLGHAEELV DSNNLVPKPA TTEHRCTICQ ATFPTGQALG GHKRKHWNGP VTTSPSPPPA 180 PSPVPLAESV QKAKNMFMDI DLNELPKFEG GEP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 57 | 63 | KKKKKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010928195.2 | 1e-158 | zinc finger protein ZAT3-like | ||||
TrEMBL | A0A2H3ZSX3 | 2e-59 | A0A2H3ZSX3_PHODC; zinc finger protein ZAT9-like | ||||
STRING | XP_008796592.1 | 2e-49 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19436 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19580.2 | 7e-19 | zinc-finger protein 2 |