PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010927559.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 1334aa MW: 147420 Da PI: 8.0734

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010927559.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00036	1218	1241	1	22
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 ++C C++sFs+k +L+ H r XP_010927559.1 1218 HTCDieGCSMSFSTKQDLTLHKRD 1241 789999***************985 PP
2	zf-C2H2	12.6	0.00042	1243	1265	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H ++H XP_010927559.1 1243 CPvkGCGKKFFSHKYLVQHRKVH 1265 9999*****************99 PP
3	zf-C2H2	12.5	0.00045	1301	1327	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg++F+ s++ rH r+ H XP_010927559.1 1301 YVCQepGCGQTFRFVSDFSRHKRKtgH 1327 89********************99666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00545	8.5E-17	30	71	IPR003349	JmjN domain
PROSITE profile	PS51183	13.716	31	72	IPR003349	JmjN domain
Pfam	PF02375	2.1E-13	32	65	IPR003349	JmjN domain
SMART	SM00558	9.4E-47	200	369	IPR003347	JmjC domain
PROSITE profile	PS51184	33.173	200	369	IPR003347	JmjC domain
SuperFamily	SSF51197	4.12E-25	218	370	No hit	No description
Pfam	PF02373	1.2E-36	233	352	IPR003347	JmjC domain
SMART	SM00355	9	1218	1240	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.967	1241	1270	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.49	1241	1265	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.8E-5	1243	1269	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	1243	1265	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.53E-6	1243	1278	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.1E-8	1270	1295	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.406	1271	1300	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0029	1271	1295	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	1273	1295	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.84E-10	1281	1324	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.2E-10	1296	1324	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.616	1301	1332	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.17	1301	1327	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	1303	1327	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1334 aa Download sequence Send to blast
MAAAASASSA EPPPPPPPAE VPQWLKSLPL APEYHPTLAE FQDPIAYILK IEKEASSFGI 60 CKIVPPLPAP PKKTTVANLN RSFAAREPNP KKPPTFTTRQ QQIGFCPRRP RPVQKPVWQS 120 GEHYTLQQFE TKAKQFERAY LKKVTAARKG GLLSPLEIET LFWKACADKP FNVEYANDMP 180 GSGFAPLGAA RRWREEEATN VGETAWNMRG VSRAKGSLLR FMKEEIPGVT SPMVYVAMMF 240 SWFAWHVEDH ELHSLNYLHM GASKTWYGVP RDAALAFEEV VRVHGYCGEV NRLVTFALLG 300 EKTTVMTPEV LIGAGIPCCR LVQNAGDFVV TFPGAYHTGF SHGFNCGEAA NIATPGWLRV 360 AKEAAIRRAS INYPPMVSHF QLLYALALSL CTRMPRGIRS EPRSSRLKDK MKGEGEEMVK 420 NIFVQSVIQN NHLLSVLLDK GSSCVVLPQN GPDSPLCSNS LVRSQVKVKP RLSLGLCSHQ 480 EALEASRLLP SNDMLGWNAG IRDLSGFGTL KGNSVSVCQG KIISSATCKF GTADFYTSSL 540 DSQNGEGEKE GTLQGDGLLD QGLLSCVTCG ILSFACVAVI QPREAAAKCL MSTDYGFLGD 600 HIDGSGELRD VNQDTNRRTG QIERHIEDMV DDYWIPCGRY SAQVSEQGVE VLSDDTGQRG 660 ISALDLLASA YGGTSDTEDE EILHEKSACT DENDIKDSPL SCKPNEHPNV ANELQNFCSS 720 KDPNKEIDLS LVGSDSQNGT AQNSHYTGGS DDSSKLTNVS AGEKCQLKLE FHGSNQPENA 780 KSAEEDSLDD NREITTSNSS IKSMEEPRDF SYREADGACH AIGSDDNHQS NMKIGNPDFG 840 SENLSIQPDV CSESSEPTKG TATLSRNADI KTTDSALTVL QKCDKDSSRM HVFCLEHAVE 900 VEKQLQPIGG VHIMLLCHPD YPKIEAEAKL LAEELGIDYT WKDVHFKEAT KEDQERIRAA 960 LEDEEAIPMN SDWAVKLGIN LYYSANLSKS PLYSKQMPYN AVIYKAFGCN SPGNSSSKPK 1020 ASSGRKPGRE KKIVVAGRWC GKVWMSNQVH PYLAHRNEDH EHDHVEKLYS QSTGRKSKVE 1080 ADLEDAPSKS IPSTSNATAA RKAGKKRKKP LRKASNKKPR RTQIDNSEDV EGVAETPSSS 1140 CGRVLRSSRS KHTEIANRKK LNMKDEAEGG PSTRLRKRPS KATEEVKTKS GGRKQIMKRK 1200 AKKAQATNLV TKDEDGEHTC DIEGCSMSFS TKQDLTLHKR DICPVKGCGK KFFSHKYLVQ 1260 HRKVHMDDRP LECPWKGCSM TFKWAWARTE HIRVHTGDRP YVCQEPGCGQ TFRFVSDFSR 1320 HKRKTGHSIR KGRR

Sequence ? help Back to Top

Protein Sequence Length: 1334 aa Download sequence Send to blast

MAAAASASSA EPPPPPPPAE VPQWLKSLPL APEYHPTLAE FQDPIAYILK IEKEASSFGI  60
CKIVPPLPAP PKKTTVANLN RSFAAREPNP KKPPTFTTRQ QQIGFCPRRP RPVQKPVWQS  120
GEHYTLQQFE TKAKQFERAY LKKVTAARKG GLLSPLEIET LFWKACADKP FNVEYANDMP  180
GSGFAPLGAA RRWREEEATN VGETAWNMRG VSRAKGSLLR FMKEEIPGVT SPMVYVAMMF  240
SWFAWHVEDH ELHSLNYLHM GASKTWYGVP RDAALAFEEV VRVHGYCGEV NRLVTFALLG  300
EKTTVMTPEV LIGAGIPCCR LVQNAGDFVV TFPGAYHTGF SHGFNCGEAA NIATPGWLRV  360
AKEAAIRRAS INYPPMVSHF QLLYALALSL CTRMPRGIRS EPRSSRLKDK MKGEGEEMVK  420
NIFVQSVIQN NHLLSVLLDK GSSCVVLPQN GPDSPLCSNS LVRSQVKVKP RLSLGLCSHQ  480
EALEASRLLP SNDMLGWNAG IRDLSGFGTL KGNSVSVCQG KIISSATCKF GTADFYTSSL  540
DSQNGEGEKE GTLQGDGLLD QGLLSCVTCG ILSFACVAVI QPREAAAKCL MSTDYGFLGD  600
HIDGSGELRD VNQDTNRRTG QIERHIEDMV DDYWIPCGRY SAQVSEQGVE VLSDDTGQRG  660
ISALDLLASA YGGTSDTEDE EILHEKSACT DENDIKDSPL SCKPNEHPNV ANELQNFCSS  720
KDPNKEIDLS LVGSDSQNGT AQNSHYTGGS DDSSKLTNVS AGEKCQLKLE FHGSNQPENA  780
KSAEEDSLDD NREITTSNSS IKSMEEPRDF SYREADGACH AIGSDDNHQS NMKIGNPDFG  840
SENLSIQPDV CSESSEPTKG TATLSRNADI KTTDSALTVL QKCDKDSSRM HVFCLEHAVE  900
VEKQLQPIGG VHIMLLCHPD YPKIEAEAKL LAEELGIDYT WKDVHFKEAT KEDQERIRAA  960
LEDEEAIPMN SDWAVKLGIN LYYSANLSKS PLYSKQMPYN AVIYKAFGCN SPGNSSSKPK  1020
ASSGRKPGRE KKIVVAGRWC GKVWMSNQVH PYLAHRNEDH EHDHVEKLYS QSTGRKSKVE  1080
ADLEDAPSKS IPSTSNATAA RKAGKKRKKP LRKASNKKPR RTQIDNSEDV EGVAETPSSS  1140
CGRVLRSSRS KHTEIANRKK LNMKDEAEGG PSTRLRKRPS KATEEVKTKS GGRKQIMKRK  1200
AKKAQATNLV TKDEDGEHTC DIEGCSMSFS TKQDLTLHKR DICPVKGCGK KFFSHKYLVQ  1260
HRKVHMDDRP LECPWKGCSM TFKWAWARTE HIRVHTGDRP YVCQEPGCGQ TFRFVSDFSR  1320
HKRKTGHSIR KGRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ip0_A	1e-74	23	458	7	413	Transcription factor jumonji (Jmj) family protein
6ip4_A	1e-74	23	458	7	413	Arabidopsis JMJ13
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1104	1108	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269\|PubMed:24280387}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269\|PubMed:24280387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010927559.1	0.0	lysine-specific demethylase REF6
Swissprot	Q5N712	0.0	JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBL	A0A2H3YDT2	0.0	A0A2H3YDT2_PHODC; LOW QUALITY PROTEIN: lysine-specific demethylase JMJ705-like
STRING	XP_008797141.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5346	32	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	relative of early flowering 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]