PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010925379.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

WRKY

Protein Properties

Length: 626aa MW: 67291.9 Da PI: 7.8273

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010925379.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.5	3.7e-30	276	335	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a Cpv+k+v+r+a+d++++++tYeg+Hnh+ XP_010925379.1 276 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRCAQDKSILITTYEGTHNHP 335 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.2E-32	261	337	IPR003657	WRKY domain
SuperFamily	SSF118290	5.23E-27	269	337	IPR003657	WRKY domain
PROSITE profile	PS50811	28.403	271	337	IPR003657	WRKY domain
SMART	SM00774	1.3E-35	276	336	IPR003657	WRKY domain
Pfam	PF03106	1.0E-26	277	335	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 626 aa Download sequence Send to blast
MEVALKRVEE ERRPGSVGDD EEGGETRKTK TLGLPICFIV FGSETAIKDQ EIQKSASPNA 60 KDSSINKQAS AATPSERSSM DTSSRPSCLN LGHSVTMSKE DQLKSTKAEM GEVREENEKL 120 KMILARIVKD YQSLQMQFFE IVQQEQEKKP IGTPPVPIEV EEPELVSLSL GTSSSGHKKE 180 EKAKTNKSKE NEQIEEGLSL GLDCKFEGSI TGTKEPGSNL SPDNSFEEPK EEEPGEPWPP 240 SKILKHFRNG DEEVSQQPQV KKARVSVRAR CDAPTMNDGC QWRKYGQKIA KGNPCPRAYY 300 RCTVAPACPV RKQVQRCAQD KSILITTYEG THNHPLPMSA TAMASTTSAA ACMLLSGSSA 360 SRPTIGSLAA TSTVMTTSNA NLHGPNFSFP SGHSRPGQFY LPNPSISSNP SYPTITLDLT 420 APPSSTSQPS QLNRFSSNFA TTPRYSSTGF SFSCLESNAI PTSWSSSYLS YESQPYNKSS 480 ISSLSLGRQP QEPLYQSYLN KSTNPSAPTP SQNSLTDTIA KAITSDPNFQ SVVAAAITSC 540 VGAQGAQAGG KSTQGHGLKW GEQLSSVPPY SSTATGNGGA SNYLTRSMAS TSSPQQGNLM 600 FPQPSLGLST SKSASASPVD NREKTN

Sequence ? help Back to Top

Protein Sequence Length: 626 aa Download sequence Send to blast

MEVALKRVEE ERRPGSVGDD EEGGETRKTK TLGLPICFIV FGSETAIKDQ EIQKSASPNA  60
KDSSINKQAS AATPSERSSM DTSSRPSCLN LGHSVTMSKE DQLKSTKAEM GEVREENEKL  120
KMILARIVKD YQSLQMQFFE IVQQEQEKKP IGTPPVPIEV EEPELVSLSL GTSSSGHKKE  180
EKAKTNKSKE NEQIEEGLSL GLDCKFEGSI TGTKEPGSNL SPDNSFEEPK EEEPGEPWPP  240
SKILKHFRNG DEEVSQQPQV KKARVSVRAR CDAPTMNDGC QWRKYGQKIA KGNPCPRAYY  300
RCTVAPACPV RKQVQRCAQD KSILITTYEG THNHPLPMSA TAMASTTSAA ACMLLSGSSA  360
SRPTIGSLAA TSTVMTTSNA NLHGPNFSFP SGHSRPGQFY LPNPSISSNP SYPTITLDLT  420
APPSSTSQPS QLNRFSSNFA TTPRYSSTGF SFSCLESNAI PTSWSSSYLS YESQPYNKSS  480
ISSLSLGRQP QEPLYQSYLN KSTNPSAPTP SQNSLTDTIA KAITSDPNFQ SVVAAAITSC  540
VGAQGAQAGG KSTQGHGLKW GEQLSSVPPY SSTATGNGGA SNYLTRSMAS TSSPQQGNLM  600
FPQPSLGLST SKSASASPVD NREKTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-20	263	337	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019707362.1	0.0	probable WRKY transcription factor 72
Swissprot	A0A3Q7GFB5	1e-125	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A3Q0HUU4	0.0	A0A3Q0HUU4_PHODC; probable WRKY transcription factor 72
STRING	XP_008787504.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5047	38	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	2e-49	WRKY DNA-binding protein 61

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]