PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010925052.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

WRKY

Protein Properties

Length: 202aa MW: 21762.9 Da PI: 5.341

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010925052.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.2	1.3e-31	115	173	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver++edp++v++tYeg Hnh XP_010925052.1 115 LDDGFKWRKYGKKSVKNSPNPRNYYRCSTEGCSVKKRVERDKEDPSYVITTYEGAHNHM 173 59********************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.8E-34	102	175	IPR003657	WRKY domain
SuperFamily	SSF118290	8.37E-28	107	174	IPR003657	WRKY domain
PROSITE profile	PS50811	31.307	110	175	IPR003657	WRKY domain
SMART	SM00774	1.4E-35	115	174	IPR003657	WRKY domain
Pfam	PF03106	3.0E-25	116	172	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MRYEIMAAVG APLHGPANIM ASFPSQPGQG GGSSDDLESD QPAAFDLSDY ILLDEASFGQ 60 PAESGAPPMV DVGQTSESNL AASGSSRTSR GGVERPRTAE GSRIAFRTKS EVEILDDGFK 120 WRKYGKKSVK NSPNPRNYYR CSTEGCSVKK RVERDKEDPS YVITTYEGAH NHMSPGVVYY 180 TTQDSTSGRF YVAGCELPPG SS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-26	106	175	8	77	Probable WRKY transcription factor 4
2lex_A	2e-26	106	175	8	77	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010925052.1	1e-149	probable WRKY transcription factor 51
TrEMBL	A0A2H3Z8M9	1e-110	A0A2H3Z8M9_PHODC; probable WRKY transcription factor 50
STRING	XP_008810071.1	1e-110	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	7e-42	WRKY DNA-binding protein 50