PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924475.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 351aa    MW: 37811.6 Da    PI: 7.6767
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924475.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.4e-06119141426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       C+ f++tG C +Gd C  aHg
  XP_010924475.1 119 DACPEFRKTGRCERGDACDLAHG 141
                     57****************88887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0067115142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.009116143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-5120143IPR000571Zinc finger, CCCH-type
SMARTSM0035612151174IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MILGEGNHRN PTVQVPPWAV SDDPMAGMHL SLPVSGVTGE EVLAALQRFL PSNNESLEAS  60
EEPLDLAVDA FSCDEFRMYE FKVRRCPRGR SHDWTECPYA HPGEKARRRD PRRFHYSGDA  120
CPEFRKTGRC ERGDACDLAH GVFESWLHPA RYRTQPCKDG TACRRRVCFF AHTPAQLRFL  180
PQSPRSQPQV ALESYDGAPA RRSKNLITSP RSTLISTPMS PPSESPPLSP VGAEAVNEVV  240
AGMRKLQLSK VRSVSCSWGV GMGSDGGFGS PRGAGAFRAG FVSLPATPTA ASGGGHGWGK  300
EAAGEFGRGM RGELFESLGK DESVEGCLDA GGVGSAAKGL PDLGWISELV K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924475.10.0zinc finger CCCH domain-containing protein 2
SwissprotO821992e-95C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A2H3Y9P80.0A0A2H3Y9P8_PHODC; zinc finger CCCH domain-containing protein 20
STRINGXP_008795482.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.16e-85C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]