PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010924475.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C3H

Protein Properties

Length: 351aa MW: 37811.6 Da PI: 7.6767

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010924475.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.6	3.4e-06	119	141	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 C+ f++tG C +Gd C aHg XP_010924475.1 119 DACPEFRKTGRCERGDACDLAHG 141 57****************88887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0067	115	142	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.009	116	143	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.7E-5	120	143	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	12	151	174	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MILGEGNHRN PTVQVPPWAV SDDPMAGMHL SLPVSGVTGE EVLAALQRFL PSNNESLEAS 60 EEPLDLAVDA FSCDEFRMYE FKVRRCPRGR SHDWTECPYA HPGEKARRRD PRRFHYSGDA 120 CPEFRKTGRC ERGDACDLAH GVFESWLHPA RYRTQPCKDG TACRRRVCFF AHTPAQLRFL 180 PQSPRSQPQV ALESYDGAPA RRSKNLITSP RSTLISTPMS PPSESPPLSP VGAEAVNEVV 240 AGMRKLQLSK VRSVSCSWGV GMGSDGGFGS PRGAGAFRAG FVSLPATPTA ASGGGHGWGK 300 EAAGEFGRGM RGELFESLGK DESVEGCLDA GGVGSAAKGL PDLGWISELV K

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MILGEGNHRN PTVQVPPWAV SDDPMAGMHL SLPVSGVTGE EVLAALQRFL PSNNESLEAS  60
EEPLDLAVDA FSCDEFRMYE FKVRRCPRGR SHDWTECPYA HPGEKARRRD PRRFHYSGDA  120
CPEFRKTGRC ERGDACDLAH GVFESWLHPA RYRTQPCKDG TACRRRVCFF AHTPAQLRFL  180
PQSPRSQPQV ALESYDGAPA RRSKNLITSP RSTLISTPMS PPSESPPLSP VGAEAVNEVV  240
AGMRKLQLSK VRSVSCSWGV GMGSDGGFGS PRGAGAFRAG FVSLPATPTA ASGGGHGWGK  300
EAAGEFGRGM RGELFESLGK DESVEGCLDA GGVGSAAKGL PDLGWISELV K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010924475.1	0.0	zinc finger CCCH domain-containing protein 2
Swissprot	O82199	2e-95	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	A0A2H3Y9P8	0.0	A0A2H3Y9P8_PHODC; zinc finger CCCH domain-containing protein 20
STRING	XP_008795482.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	6e-85	C3H family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]