PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010924017.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 459aa MW: 49636.1 Da PI: 6.8411

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010924017.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.8	6.2e-06	351	388	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIksL XP_010924017.1 351 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKSL 388 677888999*****998.....8***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.553	339	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-11	349	407	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-8	349	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.46E-5	349	392	No hit	No description
SMART	SM00353	0.0094	350	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MADDFQSGIC SGGRWWNLAR SAGSDVRASD SCSTAITDVG GGGFCWATAE LAAPKARSGE 60 ELAGSASGSS LSFQETHKPP PSDAGLPLID STFQTPGFGL STPSMDWTQS LLRSSGRGET 120 SFHAMLQEDL SSSRPYFRED PSIESNQVHA VTGDSTINLF KSMNQSFLSE QQHLSAGNAD 180 DAGVSSYPLV PASYGCSSMI LQGLLEPDNK PQQSVYDNRL VNCQSPMMAH RGSSNELLQY 240 PWAKFSQFLK SSPPKQQPGN QLQFSNNTPF WNASAASMSE VRTGFYPPTP SQFVSEAFEQ 300 KTSCGNLAPK SNSEGVRDSC SSASKKSGSS EPTFKKPRIE SPLPLPTFKV RKEKLGDRIT 360 ALQQLVSPFG KTDTASVLHE AIEYIKSLHD QVGALSNPYL KNGHRMQHQQ GSDKSKNGDG 420 PKQDLRSRGL CLVPISITYP MASETTADFW HPTFGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MADDFQSGIC SGGRWWNLAR SAGSDVRASD SCSTAITDVG GGGFCWATAE LAAPKARSGE  60
ELAGSASGSS LSFQETHKPP PSDAGLPLID STFQTPGFGL STPSMDWTQS LLRSSGRGET  120
SFHAMLQEDL SSSRPYFRED PSIESNQVHA VTGDSTINLF KSMNQSFLSE QQHLSAGNAD  180
DAGVSSYPLV PASYGCSSMI LQGLLEPDNK PQQSVYDNRL VNCQSPMMAH RGSSNELLQY  240
PWAKFSQFLK SSPPKQQPGN QLQFSNNTPF WNASAASMSE VRTGFYPPTP SQFVSEAFEQ  300
KTSCGNLAPK SNSEGVRDSC SSASKKSGSS EPTFKKPRIE SPLPLPTFKV RKEKLGDRIT  360
ALQQLVSPFG KTDTASVLHE AIEYIKSLHD QVGALSNPYL KNGHRMQHQQ GSDKSKNGDG  420
PKQDLRSRGL CLVPISITYP MASETTADFW HPTFGGTFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010924017.1	0.0	transcription factor bHLH123
TrEMBL	A0A2H3X230	0.0	A0A2H3X230_PHODC; transcription factor bHLH123-like
STRING	XP_008777138.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2970	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	5e-54	bHLH family protein