PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922776.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 278aa    MW: 30021.4 Da    PI: 9.6083
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922776.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-20107156255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +grW+AeIrdp++   +kr +lg+f+taeeAa+ ++ a+ +l+g
  XP_010922776.1 107 RFRGVRRRP-WGRWAAEIRDPTQ---KKRLWLGTFDTAEEAAAVYDDAAVRLKG 156
                     79*******.**********954...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381235.3E-621275IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.38E-21106164No hitNo description
PfamPF008473.3E-12107156IPR001471AP2/ERF domain
PROSITE profilePS5103224.25107164IPR001471AP2/ERF domain
SMARTSM003801.1E-34107170IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-22107165IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-30107165IPR001471AP2/ERF domain
PRINTSPR003673.5E-10108119IPR001471AP2/ERF domain
PRINTSPR003673.5E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAGVKFSEHV VAMRRTGQAA KADGKSRRRR VVRVCFTDAD ATDSSSSDEE IGGRTARRRV  60
KRYVHEIRIE AAAADAAAVA AAHRRRAAAA PPKRAEKTPE RAGNQKRFRG VRRRPWGRWA  120
AEIRDPTQKK RLWLGTFDTA EEAAAVYDDA AVRLKGAKAV TNFPTKKGLA GTAAADSAEE  180
VVVSVKEAPS KSGGSGSGSG GSFDDSYASP TSVLRYGGEE TPFDFLGDGG VDAFGFNLEP  240
PLYVTESPWA RPGFWEMDFG DFDADVFDAD VFSLEPGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-19106166465ATERF1
3gcc_A4e-19106166465ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008802999.11e-117pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A2H3YS481e-115A0A2H3YS48_PHODC; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_008802999.11e-116(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15640615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-13cytokinin response factor 4