PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010921554.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 365aa    MW: 39686 Da    PI: 7.2748
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010921554.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY802.5e-25187247259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgy+WrKYGqK++  s+fprsYYrCt++   gC++kk+v+r +edp + ei+Y g+H ++
  XP_010921554.1 187 DDGYTWRKYGQKDILRSRFPRSYYRCTHKsyyGCNAKKQVQRLDEDPYTYEIKYCGTHSCK 247
                     8***************************99999*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-25179248IPR003657WRKY domain
SuperFamilySSF1182907.59E-24182248IPR003657WRKY domain
SMARTSM007741.8E-32186248IPR003657WRKY domain
PROSITE profilePS5081120.438187249IPR003657WRKY domain
PfamPF031064.2E-23187247IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDMDTWNQIL HACKLARELE TRLRHFANHP PLLVSSCEEV VGAFNKAIHD LRSHNTSHYS  60
TQMFFGETSG SLSEPLDIRA GEGSSHGGSY MQAIDFSQGQ LMGLDFQATS MAMRMVDTGR  120
GSTPDVNIDA FGRGGGEAPV AAAGSLVAER RPTGSSIQRS SRRRRDSGGT IVRVPALRTG  180
NTEIPPDDGY TWRKYGQKDI LRSRFPRSYY RCTHKSYYGC NAKKQVQRLD EDPYTYEIKY  240
CGTHSCKTST TPLLIPSITP NTNNASSSSN NNPPGEAPMP EATAQPPSSL PTSTQLGIWF  300
SREFDHGQRE IPSLVGSSTQ AGPSNMQGGG RDIDCPVAAL ADVMFNSGSS GSSMDAIFSQ  360
PRQDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-19187247969OsWRKY45
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921554.20.0WRKY transcription factor 55
TrEMBLA0A2H3ZKV31e-140A0A2H3ZKV3_PHODC; WRKY transcription factor 55
STRINGXP_008782780.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.19e-43WRKY DNA-binding protein 55