PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010917014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 92aa    MW: 10120.3 Da    PI: 7.3643
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010917014.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.9e-0920591554
                    HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +iN+  ++L+ llP+a   +++++s a++L+ +++YI+sL
  XP_010917014.1 20 QINDLVSKLQALLPEAGIRSNERVSAASVLQDTCNYIRSL 59
                    8**************87889999***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.6E-10377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.769559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-101581IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.84E-51962No hitNo description
PfamPF000106.5E-62059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRSRQ SSSSRITDEQ INDLVSKLQA LLPEAGIRSN ERVSAASVLQ DTCNYIRSLH  60
QEANDLSERL SELLATTDAS SAQAAIIRSL LM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917014.12e-57transcription factor ILI6
SwissprotB8APB54e-38ILI6_ORYSI; Transcription factor ILI6
SwissprotQ0DUR24e-38ILI6_ORYSJ; Transcription factor ILI6
TrEMBLM0S5Y29e-43M0S5Y2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P07410_0011e-43(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26753378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-31bHLH family protein