PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010911980.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Trihelix

Protein Properties

Length: 431aa MW: 50131.3 Da PI: 6.3711

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010911980.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.5	3e-22	115	210	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt+++v++Li++ ++++e+ + + +kk++W+ vsk+m+e+ + +sp+qC++k+++lnkryk+++e+ +++ +++ +++ +++d XP_010911980.1 115 KWTDRMVKLLITVISYLNEDATELNssakrkltmlQKKGKWKLVSKVMAEKNCYVSPQQCEDKFNDLNKRYKRLTEILGRGtSCKIVENPALLDY 209 7************99999887444567788899*******************************************955787777777766 PP trihelix 85 l 85 + XP_010911980.1 210 M 210 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.3E-20	113	237	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MEGNVSAGNM MPGSSPYGAF ALEVSMAMHQ QQHPHGCFHH QQQHPNLSQH QGPMVHQPMN 60 SIFCQPGQMS ECEHDYDKVD YGKNSTSEDD GTEDGADVPN ESGREKKAAP WQRVKWTDRM 120 VKLLITVISY LNEDATELNS SAKRKLTMLQ KKGKWKLVSK VMAEKNCYVS PQQCEDKFND 180 LNKRYKRLTE ILGRGTSCKI VENPALLDYM PSISEKVKDD ARKILRSKHL YYEEMCSYHN 240 KNRINLPADP EVQRSVQLLL KISDDHDTKR AAQDYFDEDD QEDSDDGEDD VEEHDMLFRD 300 IGGPSFPKRM KQGLVHEDLN STNSLGPQIN PRRPYSQSSS FVVNQVFPEE SSASWAQKQP 360 IRSRAIQLEE QRLHIQAEML EIERWRFKWK HFCKKKDSEL DRIRMQNERM KLENERLSLE 420 QKHKELELEL Y

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MEGNVSAGNM MPGSSPYGAF ALEVSMAMHQ QQHPHGCFHH QQQHPNLSQH QGPMVHQPMN  60
SIFCQPGQMS ECEHDYDKVD YGKNSTSEDD GTEDGADVPN ESGREKKAAP WQRVKWTDRM  120
VKLLITVISY LNEDATELNS SAKRKLTMLQ KKGKWKLVSK VMAEKNCYVS PQQCEDKFND  180
LNKRYKRLTE ILGRGTSCKI VENPALLDYM PSISEKVKDD ARKILRSKHL YYEEMCSYHN  240
KNRINLPADP EVQRSVQLLL KISDDHDTKR AAQDYFDEDD QEDSDDGEDD VEEHDMLFRD  300
IGGPSFPKRM KQGLVHEDLN STNSLGPQIN PRRPYSQSSS FVVNQVFPEE SSASWAQKQP  360
IRSRAIQLEE QRLHIQAEML EIERWRFKWK HFCKKKDSEL DRIRMQNERM KLENERLSLE  420
QKHKELELEL Y

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010911981.1	0.0	uncharacterized protein LOC105038013
TrEMBL	A0A2H3XM15	0.0	A0A2H3XM15_PHODC; uncharacterized protein LOC103704355
STRING	XP_008785828.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-109	sequence-specific DNA binding transcription factors