PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010910582.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 441aa    MW: 47164.6 Da    PI: 6.035
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010910582.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-13263308454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h  +Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av+YIk+L
  XP_010910582.1 263 NHVDAERQRREKLNQRFYALRSVVPNV-----SRMDKASLLADAVDYIKEL 308
                     7999**********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.4E-3334197IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474598.11E-19258327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.428259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-15262313No hitNo description
Gene3DG3DSA:4.10.280.103.7E-18263326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-11263308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-16265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEEPVSHSSS SSPPPAPPPP LFSFSSAPDV APTLQLRLQC LLHSRLEWWA YAILWRPSSA  60
EDGAAAGCPL VLSWEAGHFR GARDADPPRK VAGDAVVGSA ADGCGVTDVE WFYVLSLPRS  120
FTAGDAATLP ARVFRSLSPV WLAGGDALHA CRCERAREAQ LHGVETLVCV PAGGGVLEMG  180
SAELIPEDWT LVEQARAFLD GAQIGAVDAA GSEAAPARPP LQPRTGKLSS WVDSEQSYAK  240
EGTTVRGKKL GRRLGTGKEV TVNHVDAERQ RREKLNQRFY ALRSVVPNVS RMDKASLLAD  300
AVDYIKELRA RIEELEDEIK TAKKEPEVVD QVGSGHAITA TITSSNSTVS SEMAEGGEKV  360
VELEVVAVGA EEAVVRVRTE NVKHPPARLM GALRDLEAVV HHAIVASVDG VMVQDVVVRM  420
PRGLRVGGNL KAALLAKLEK N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-25332008193Transcription factor MYC3
4rqw_B1e-25332008193Transcription factor MYC3
4rs9_A1e-25332008193Transcription factor MYC3
4yz6_A1e-25332008193Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910582.10.0transcription factor MYC3
TrEMBLA0A2H3YTC01e-177A0A2H3YTC0_PHODC; transcription factor MYC2-like
STRINGXP_008803328.11e-178(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.16e-46bHLH family protein