PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907240.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 547aa    MW: 58339.9 Da    PI: 5.8979
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907240.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH292e-09364411455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_010907240.1 364 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 411
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-17358429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.04E-11358415No hitNo description
Gene3DG3DSA:4.10.280.105.2E-17360428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802360410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6364411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11366416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MEKEGFFTTT PALNWQAGET RLPPPPEMTS VPAADCFLNL NWDQTIEQST HFDSALSSLV  60
SSPSSNPHTA AANDSVVIRE LIGRLGSICS SGEISPTSRY HGANTSCYST PLNSPPKLNL  120
SMMEGRGGLP VSGNMAMPTA QLSPFAADPG FAERAARSCF GGRSYGGLTG QFGPSETGKL  180
SRVSSSQSLM GGGSQMDISE NGKEIAMQER AQLEMGMRSK LGGRMSGSSI LDNGEFGSGQ  240
EESSASDRIA AGGEASLRGN SENNARKRKA PPKGKGKEAP LPSSGTNPPK MAEEEDSSPK  300
RSKPAETNGS DKDTAVKPKA EQNGSAISSG DAGQKQGKEN NVKAPEPPKD YIHVRARRGQ  360
ATDSHSLAER VRREKISERM KLLQDLVPGC NKVTGKAVML DEIINYVQSL QRQVEFLSMK  420
LATVNPRLDF NMENLLPKDM HQASGPMPPP PLYPLDATST AFSYAHQPQG TSLQSVVTNG  480
LENQCSLDPL DTSLHRSLSM QPPPLDGFGD ATSQLGTFWE DDLQSVVQMG FGQGQENAFS  540
SQGFHGN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029117287.10.0transcription factor bHLH62
TrEMBLA0A2H3Z8D50.0A0A2H3Z8D5_PHODC; transcription factor bHLH78-like isoform X1
STRINGXP_008809649.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-69bHLH family protein