PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010904958.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | WRKY | ||||||||
Protein Properties | Length: 251aa MW: 27764.4 Da PI: 8.6081 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102 | 3.3e-32 | 123 | 180 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk ++rs+edp+vv++tYeg+H h+ XP_010904958.1 123 EDGYQWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKLIQRSSEDPTVVITTYEGQHCHH 180 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-33 | 108 | 181 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-28 | 114 | 180 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.115 | 117 | 182 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-37 | 122 | 181 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-25 | 123 | 180 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MEEQSRDPVA TWTFSGDRGF IYCTERDDSI LGDVAPEVGS GFLTFDLGDA SGLDMVAPPP 60 EKRSPPPPPV PPPKSGAGSG GTALSSSTGD PPETTNKVIR KRQKRAHQPR FAFMTKSEID 120 LLEDGYQWRK YGQKAVKNSP FPRSYYRCTN SKCTVKKLIQ RSSEDPTVVI TTYEGQHCHH 180 SVAFPRGGMR ARHAAALMDQ LVPSLRFPAM PLHGNQPMVP GQLVQFPHKE HYNEGLLDDI 240 MLSTVRKTQG E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-25 | 112 | 179 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-25 | 112 | 179 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010904958.1 | 0.0 | probable WRKY transcription factor 51 | ||||
TrEMBL | A0A2H3X1Q9 | 7e-64 | A0A2H3X1Q9_PHODC; probable WRKY transcription factor 57 isoform X2 | ||||
STRING | XP_008776993.1 | 5e-63 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2125 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 1e-54 | WRKY DNA-binding protein 57 |