PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010557975.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

TALE

Protein Properties

Length: 675aa MW: 73947.9 Da PI: 6.6249

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010557975.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.4	2.8e-09	375	412	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + XP_010557975.1 375 FEHflHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVR 412 554458******************************88 PP
2	BELL	116.5	1.3e-37	224	295	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kka+L+++l+eVd+rYkqy++q+++++ssFe++ag gsak YtslAlk+iS++FrcL dai+ qi XP_010557975.1 224 ERQEIQMKKARLVTMLDEVDQRYKQYHNQMRIIVSSFEQAAGSGSAKTYTSLALKTISKQFRCLNDAIKAQI 295 79********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	5.4E-49	149	293	IPR006563	POX domain
Pfam	PF07526	4.0E-45	155	291	IPR006563	POX domain
PROSITE profile	PS50071	12.244	353	416	IPR001356	Homeobox domain
SMART	SM00389	1.6E-9	356	420	IPR001356	Homeobox domain
CDD	cd00086	5.88E-12	356	417	No hit	No description
SuperFamily	SSF46689	5.99E-17	357	423	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.2E-28	359	422	IPR009057	Homeodomain-like
Pfam	PF05920	4.6E-18	373	412	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MATYFAGNLG IPGGEDGGHS AGAGGGGLGL HTMVLMNPTT YVHFNSGADQ DPPPNSSSAA 60 AAGNFILFNP STAGNFLASN QAPPQHFHDH DHNNNNTNSV NNVSAVLHGF IPRVYGTPVE 120 AARETPRANQ QGLSLSLYSE QQRPSFVVSG MQGSVLSSKY LKAAQELLDE VATVNENNTS 180 TENKNRKCLL SNKNGDEVDG KSAGESTRGA ETGDKVAAEL TVPERQEIQM KKARLVTMLD 240 EVDQRYKQYH NQMRIIVSSF EQAAGSGSAK TYTSLALKTI SKQFRCLNDA IKAQIKALNK 300 SLGGEEREED EEEGKAEGGS SSSSSRLKFV DHHLRQQRAL QQLGMIHHSN NNNNAWRPQR 360 GLPERAVSVL RSWLFEHFLH PYPKDSDKVM LAKQTGLTRS QVSNWFINAR VRLWKPMVEE 420 MYLEEMKEHE KNNGSSKKKV NPNEHQDKED SMPKSVGYSD KKEKSHVSEA PQNSLMLRQD 480 SFMNNNGHGG ITMAVPVTAS ASATGFSISG ASELEGITQG SPKRVRINEI LHSPASVPSA 540 KMDFNIPERF RDEKEFSFLA SNTNFMGGNF GAYPIEEAGR FEAEEFTPSY SGNNNGVSLT 600 LGLPHCESFS VSAPTHQNFF PNQNIQIGRD VEMSEPNEFG AISTSESHSS AAAYNTISLQ 660 NQRRFSAQLL PDFVT

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MATYFAGNLG IPGGEDGGHS AGAGGGGLGL HTMVLMNPTT YVHFNSGADQ DPPPNSSSAA  60
AAGNFILFNP STAGNFLASN QAPPQHFHDH DHNNNNTNSV NNVSAVLHGF IPRVYGTPVE  120
AARETPRANQ QGLSLSLYSE QQRPSFVVSG MQGSVLSSKY LKAAQELLDE VATVNENNTS  180
TENKNRKCLL SNKNGDEVDG KSAGESTRGA ETGDKVAAEL TVPERQEIQM KKARLVTMLD  240
EVDQRYKQYH NQMRIIVSSF EQAAGSGSAK TYTSLALKTI SKQFRCLNDA IKAQIKALNK  300
SLGGEEREED EEEGKAEGGS SSSSSRLKFV DHHLRQQRAL QQLGMIHHSN NNNNAWRPQR  360
GLPERAVSVL RSWLFEHFLH PYPKDSDKVM LAKQTGLTRS QVSNWFINAR VRLWKPMVEE  420
MYLEEMKEHE KNNGSSKKKV NPNEHQDKED SMPKSVGYSD KKEKSHVSEA PQNSLMLRQD  480
SFMNNNGHGG ITMAVPVTAS ASATGFSISG ASELEGITQG SPKRVRINEI LHSPASVPSA  540
KMDFNIPERF RDEKEFSFLA SNTNFMGGNF GAYPIEEAGR FEAEEFTPSY SGNNNGVSLT  600
LGLPHCESFS VSAPTHQNFF PNQNIQIGRD VEMSEPNEFG AISTSESHSS AAAYNTISLQ  660
NQRRFSAQLL PDFVT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	4e-16	362	420	5	63	Homeobox protein Meis2
4xrm_B	4e-16	362	420	5	63	Homeobox protein Meis2
4xrs_A	3e-16	362	419	1	58	Homeobox protein Meis1
4xrs_B	3e-16	362	419	1	58	Homeobox protein Meis1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010557975.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010557975.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-151	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A2I4DRV5	0.0	A0A2I4DRV5_JUGRE; BEL1-like homeodomain protein 1
STRING	XP_010557975.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5008	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-132	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]