PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557594.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 315aa    MW: 35195.7 Da    PI: 7.9271
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557594.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.4e-092145126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ykt+ C +f+  G C+ G++C+FaHg
  XP_010557594.1 21 YKTRMCARFRV-GACRNGETCNFAHG 45
                    9**********.*************8 PP
2zf-CCCH44.33e-14205231127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC+ f  tG+C++Gd+C+FaHg+
  XP_010557594.1 205 WKTRLCMKFEITGQCPFGDKCHFAHGQ 231
                     8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.66E-81851IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-141853IPR000571Zinc finger, CCCH-type
SMARTSM003560.00112046IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.542047IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-62145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.868100128IPR000571Zinc finger, CCCH-type
SMARTSM003560.17100127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6101126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-6103126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-10203235IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7204231IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507204232IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-15204235IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-12205231IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MNSRAPMTPP VNRGGTSNIF YKTRMCARFR VGACRNGETC NFAHGIEDLR QPPSNWQELV  60
GATTSEERER ERERERERER PTSSVVVRNM SNWDEDQKII QRMKLCRKFC CGEECPYGDR  120
CNFLHEDLAK YREDTSKLRE SSAISISIGN GGSDPLAGNV SSSSSQIEAN RHVGPMPLPV  180
PPVPLCNPNP ILNSNLNSNC KTVYWKTRLC MKFEITGQCP FGDKCHFAHG QAELNSALGR  240
VEAEAMNVVT FAGNDASAMK AATVQVTSAS SSPNEEPERK KCLFKWNDPK KINRIYADWI  300
DDLPVGQTAA KQVES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16979RERERERERER
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557594.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557594.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
SwissprotQ9LT811e-124C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLR0HYU21e-121R0HYU2_9BRAS; Uncharacterized protein
STRINGXP_010557594.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-112C3H family protein