PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557407.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 347aa    MW: 39043.4 Da    PI: 8.5918
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557407.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05190209120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     + C++C+k+F+r  n++ H+
  XP_010557407.1 190 FACSICNKTFNRYNNMQMHM 209
                     78*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.18E-5172213No hitNo description
Gene3DG3DSA:3.30.160.604.0E-6190209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128742.0E-4190209No hitNo description
SMARTSM003550.081190212IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.512190217IPR007087Zinc finger, C2H2
PROSITE patternPS000280192212IPR007087Zinc finger, C2H2
SMARTSM00355190238270IPR015880Zinc finger, C2H2-like
SMARTSM00355130275295IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSLRKSQERG LSFHHHFPSF NGVLKPSPSP PPSLLSHLTR QILLRDYHTN MVESPLFCRP  60
QDHFSKGQNI TCLPLLNKLM EKPPEPNLQK NVKEALEVEE GGGEGEVTVA LHIGIPSYHR  120
NNSDAISDCQ KMAIKKEDDG DHGDGDDGDG DGVVIRKRKM SSESDFDLDI SGTRFWIPSA  180
AQILVGPMQF ACSICNKTFN RYNNMQMHMW GHGSEFRKGP DSLKGTTQPA EILRLPCYCC  240
AVGCKNNIDH PRARPLKDFR TLQTHYKRKH GSKSFSCRKC GKALAVKGDW RTHEKNCGKL  300
WYCTCGSDFK HKRSLKDHIR SFGKGHSPHP SLLSGGFEEE KECVTTE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557407.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557407.10.0PREDICTED: zinc finger protein WIP3-like
SwissprotQ9SGD11e-138ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A397YV631e-138A0A397YV63_BRACM; Uncharacterized protein
STRINGXP_010557407.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-136WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]