PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554544.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 317aa    MW: 34737.6 Da    PI: 5.6724
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554544.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.53.8e-18229262134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C +tkTp+WR gp g+ktLCnaCG++y++ +
  XP_010554544.1 229 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 262
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.2E-771316IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.688223259IPR000679Zinc finger, GATA-type
SMARTSM004012.2E-16223273IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-15227286No hitNo description
Gene3DG3DSA:3.30.50.102.3E-14227260IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.40E-14228275No hitNo description
PfamPF003204.1E-16229262IPR000679Zinc finger, GATA-type
PROSITE patternPS003440229254IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MIGQSFADEM DCGNFFDNMD DLIDFPNEDI GLGFGMGDND VFPSIWSAQP ESWPGSDQLF  60
SSKNNSDSPT ELYVPFANIV QLEQPSGFVD DSCSDKKGDS SSIDTECRSS SPVSVLESSS  120
SSSQTANLAE PITGKLGRPR TKRPRPVIQE PNEEEKERES NAFSGFSGAE SRLVIRIPKH  180
LISEHENSSK KKKKKTAKVS PSSSSSSSSS SCLDQDHGPS SSDKPVRKCM HCEVTKTPQW  240
RLGPMGPKTL CNACGVRYKS GRLFPEYRPA ASPTFMPSLH SNSHKKVVEM RSMRCNGNAI  300
DDELIPNNNA HIAIDYV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141145KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554544.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554544.10.0PREDICTED: GATA transcription factor 8-like
SwissprotQ9SV305e-94GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A078JNQ41e-102A0A078JNQ4_BRANA; GATA transcription factor
TrEMBLA0A397ZQ741e-102A0A397ZQ74_BRACM; GATA transcription factor
STRINGXP_010554544.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-87GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]