PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010551286.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 462aa MW: 50955.1 Da PI: 5.7697

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010551286.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.5	8.2e-10	174	213	5	41
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 k rr+++NReAAr+sR+RKka++++Le + ++Le+e XP_010551286.1 174 KTLRRLAQNREAARKSRLRKKAYVQQLESsrlRLAQLEEE 213 788*************************833344444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.6E-7	167	216	No hit	No description
SMART	SM00338	8.1E-7	170	228	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.473	172	216	IPR004827	Basic-leucine zipper domain
CDD	cd14708	7.95E-22	174	222	No hit	No description
Pfam	PF00170	1.6E-6	174	213	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.97E-6	174	216	No hit	No description
PROSITE pattern	PS00036	0	177	192	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.6E-28	259	332	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MQSSFKATPF SPDFYCQSSF FYRGSGGLEE IHQPTAGFHH DGAVDLSPIG SIFGSAPADV 60 TVACTNLHYA TFDTVLERFE GEAGCLDTGQ LVFQGGTTTG AVAAAAAASV NGHCGNTMEN 120 WCDSVSAMAD NSQHTDTSTD IDTDDKTQLN GVQQGTLFAT ASTDQHKAKS GDQKTLRRLA 180 QNREAARKSR LRKKAYVQQL ESSRLRLAQL EEELKRARQQ GFVVENGVSE DHTLQVSGNG 240 TFAFELEYAR WVDEHQRLIN DLRSAVNLQM GDNELRVLVD AVMAHYDEIF RLKGIGSKVD 300 VFHMLSGMWT TPAERFFMWL GGFRSSELLR ILGNNLDPLT EQQLTGICNL QQSSLQAEEA 360 LSQGMEALQQ TLLETLSSSS SSNGLNSPAN VADYMGQMAI AMGRLASLEN FLRQADLLRQ 420 QTLQQLYRIL TTRQAARAFL VIHDYVSRLR ALSSLWLARP KC

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MQSSFKATPF SPDFYCQSSF FYRGSGGLEE IHQPTAGFHH DGAVDLSPIG SIFGSAPADV  60
TVACTNLHYA TFDTVLERFE GEAGCLDTGQ LVFQGGTTTG AVAAAAAASV NGHCGNTMEN  120
WCDSVSAMAD NSQHTDTSTD IDTDDKTQLN GVQQGTLFAT ASTDQHKAKS GDQKTLRRLA  180
QNREAARKSR LRKKAYVQQL ESSRLRLAQL EEELKRARQQ GFVVENGVSE DHTLQVSGNG  240
TFAFELEYAR WVDEHQRLIN DLRSAVNLQM GDNELRVLVD AVMAHYDEIF RLKGIGSKVD  300
VFHMLSGMWT TPAERFFMWL GGFRSSELLR ILGNNLDPLT EQQLTGICNL QQSSLQAEEA  360
LSQGMEALQQ TLLETLSSSS SSNGLNSPAN VADYMGQMAI AMGRLASLEN FLRQADLLRQ  420
QTLQQLYRIL TTRQAARAFL VIHDYVSRLR ALSSLWLARP KC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010551286.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010551286.1	0.0	PREDICTED: transcription factor PERIANTHIA isoform X1
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	V4MB25	0.0	V4MB25_EUTSA; Uncharacterized protein
STRING	XP_010551286.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	0.0	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]