PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010550093.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | LBD | ||||||||
Protein Properties | Length: 317aa MW: 36475.6 Da PI: 6.2561 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.4 | 5.5e-39 | 49 | 146 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCa+Ck++rr+C+kdC lapyfpa+qpk f+n+h+lFG+sn++k+lk++p+++re+a++s+ ye+ +r r Pv+G+++vi++l+ ql+++ ++l XP_010550093.1 49 ACAVCKYQRRRCKKDCLLAPYFPADQPKVFQNAHRLFGVSNIQKILKDVPPDQREEAVKSIKYESFIRSRFPVHGCCEVIWHLRYQLHHATEQLR 143 7******************************************************************************************9998 PP DUF260 96 llk 98 +++ XP_010550093.1 144 HIH 146 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.831 | 48 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-37 | 49 | 145 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MSVTTGRQTR RENVNKDNAV NVIVLLILSI LASVVMTLKG SSSGAGSQAC AVCKYQRRRC 60 KKDCLLAPYF PADQPKVFQN AHRLFGVSNI QKILKDVPPD QREEAVKSIK YESFIRSRFP 120 VHGCCEVIWH LRYQLHHATE QLRHIHGRIA SLKADQFRGQ TSEKPNDPMP YPDNYLADDN 180 AFPYMPNEYN GNFEPALDMK PFDIKAHEHH HVMQLPHYNN FYDHNQIENN SNYNGNNDCI 240 VDDNNNNTII NNHPLSLQQN TFVQHEIDDT HDYDEMSFDP LADDRHLASK ETCESSAESS 300 CFNLTTMEQT EDIRTFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-28 | 41 | 165 | 4 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-28 | 41 | 165 | 4 | 127 | LOB family transfactor Ramosa2.1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010550093.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010550093.1 | 0.0 | PREDICTED: LOB domain-containing protein 12-like | ||||
STRING | XP_010550093.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6303 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 2e-33 | LOB domain-containing protein 27 |