PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543658.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 272aa    MW: 29305.4 Da    PI: 5.2363
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543658.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-13206251655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+ksLq
  XP_010543658.1 206 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKSLQ 251
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-16203264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-13204255No hitNo description
Gene3DG3DSA:4.10.280.102.4E-16205262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10206251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-13206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MQSTPVGSRS SGGGGGEGGG GGGGGEGPRG GGLSRIRSAP ATWLEALLEE DEEDALRPNL  60
GLTELLTGNS PGLQQGATTS RNTFAFPSPT EQGLYQQAGF HRQNSSPADF LIGSGVGSDG  120
YFSNFGIPAN YDYLSDNVDV SPSSKAPREM EGHFSSSPEF ASPMKGEQSS GQVPVGVSDM  180
NMEKLLEESV PCRVRAKRGC ATHPRSIAER VRRTRISDRI RKLQELVPNM DKQTNTADML  240
EEAVEYVKSL QRQIQELTEH QKRCTCRPKE EQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543658.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543658.10.0PREDICTED: transcription factor bHLH81
SwissprotQ9M0R01e-120BH081_ARATH; Transcription factor bHLH81
TrEMBLA0A078HTG51e-122A0A078HTG5_BRANA; BnaA08g06290D protein
TrEMBLA0A3P6C4B61e-122A0A3P6C4B6_BRACM; Uncharacterized protein
STRINGXP_010543658.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09180.11e-112bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]