PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010538354.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 235aa MW: 25850.8 Da PI: 10.8173 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 257.2 | 1e-78 | 41 | 235 | 104 | 301 |
GAGA_bind 104 gtksidslqqlsepqledsavelreeeklealpieeaaeeakekk.kkkkrqrakkp.kekkakkkkkksekskkkvkkesaderskaekksidl 196 t+ id +q +++++ ++ ++ +p+ +++++++++k +k k+ r+k+p k++k + ++k+++++kk +k++s+ +++k+ekk+ ++ XP_010538354.1 41 RTTGIDLSQL---TRVNHVEGGMVPPAHIF-PPVGDTRNDTETTKpMKGKSTRQKSPsKTPKPNPPRKNPSAPKKPKKTPSV-PEVKREKKNPNI 130 5555555555...33333333333344444.445444444444440444444455442777888999999999999999997.69********** PP GAGA_bind 197 vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAk 291 +++ s+D s++P PvCsCtG++r+CYkWG GGWqS+CCt+++S yPLP+st+r+ aR+agrKmS+ga+ klL +La+eGydls+pvDLk+hWA+ XP_010538354.1 131 NIDISSFDFSGVPSPVCSCTGVPRVCYKWGLGGWQSSCCTISVSKYPLPMSTTRPRARLAGRKMSNGAYVKLLLRLAGEGYDLSHPVDLKNHWAR 225 *********************************************************************************************** PP GAGA_bind 292 HGtnkfvtir 301 HGtnkfvti+ XP_010538354.1 226 HGTNKFVTIK 235 *********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 3.2E-78 | 1 | 235 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.2E-68 | 78 | 235 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSSYPHQNHM ISEANTGQGS AGMIATHVPW FYPGRFIPIP RTTGIDLSQL TRVNHVEGGM 60 VPPAHIFPPV GDTRNDTETT KPMKGKSTRQ KSPSKTPKPN PPRKNPSAPK KPKKTPSVPE 120 VKREKKNPNI NIDISSFDFS GVPSPVCSCT GVPRVCYKWG LGGWQSSCCT ISVSKYPLPM 180 STTRPRARLA GRKMSNGAYV KLLLRLAGEG YDLSHPVDLK NHWARHGTNK FVTIK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010538354.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010538354.1 | 1e-174 | PREDICTED: protein BASIC PENTACYSTEINE7 | ||||
Swissprot | O82286 | 1e-105 | BPC7_ARATH; Protein BASIC PENTACYSTEINE7 | ||||
TrEMBL | A7UN68 | 1e-109 | A7UN68_ARAAE; GAGA-binding transcriptional activator (Fragment) | ||||
STRING | XP_010538354.1 | 1e-174 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13674 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35550.4 | 1e-90 | basic pentacysteine 7 |