PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536792.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 459aa    MW: 49972.5 Da    PI: 5.1371
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536792.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008181103123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ Cgk F++   L  H r H
  XP_010536792.1  81 HICSECGKGFKSGKALGGHKRIH 103
                     68*****************9998 PP

2zf-C2H211.50.0009133155123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  C + F++   L  H+r H
  XP_010536792.1 133 FACCVCRRKFTSMKALYGHMRFH 155
                     78*******************99 PP

3zf-C2H2110.0014325347123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C  C+ksF++   L  H  +H
  XP_010536792.1 325 HVCVTCNKSFPSYQALGGHRASH 347
                     79**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.5E-980103IPR007087Zinc finger, C2H2
SuperFamilySSF576675.91E-880155No hitNo description
SMARTSM003550.04781103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.09281108IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.9E-582106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM003550.36133155IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723133155IPR007087Zinc finger, C2H2
PfamPF139120.029133156IPR007087Zinc finger, C2H2
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
SMARTSM003550.29325347IPR015880Zinc finger, C2H2-like
PfamPF139125.3E-11325349IPR007087Zinc finger, C2H2
SuperFamilySSF576674.64E-7325347No hitNo description
PROSITE profilePS501579.536325352IPR007087Zinc finger, C2H2
PROSITE patternPS000280327347IPR007087Zinc finger, C2H2
SuperFamilySSF576674.64E-7381408No hitNo description
SMARTSM003550.082386408IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078386408IPR007087Zinc finger, C2H2
PfamPF139129.4E-12386409IPR007087Zinc finger, C2H2
PROSITE patternPS000280388408IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MDEEEAQYEA CEFSAVSSGE AEAEARSGPI KLRIPNFKSF VEEDYDDRGA KDVEDESEED  60
RDGDHGAGNK VEDGGGEGQT HICSECGKGF KSGKALGGHK RIHGNETSRS REKPRMIIPH  120
SANLELVHGF VEFACCVCRR KFTSMKALYG HMRFHPDRGW RGVQPPQTRP GSSSSTLSLD  180
HDHFNSDYDG DGDGDDDDDD GGENSGFSDC NLESIVPDMV VDLKESTKGW SITGKRGRRS  240
SSKVETNPED DMQEAVNDLL MLANAETGPE KPRNPDILES SEKAEENVLE QKKIRRKKRR  300
LSDMEKTSNR DELDHHIDGT NPPKHVCVTC NKSFPSYQAL GGHRASHNKA KNESSGVGAY  360
TLLASEATGL VSGQGSNTSV SSNGDHQCNI CQKRFPTGQA LGGHKRCHWV GPAAEAAGSS  420
TSQATDQTQE AKVQRPVLSI DLNEPPPKEE GSGGETTVR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291299KKIRRKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536792.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536792.10.0PREDICTED: zinc finger protein ZAT9
TrEMBLR0EWN03e-94R0EWN0_9BRAS; Uncharacterized protein
STRINGXP_010536792.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-85C2H2 family protein