PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010536792.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C2H2 | ||||||||
Protein Properties | Length: 459aa MW: 49972.5 Da PI: 5.1371 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00081 | 81 | 103 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F++ L H r H XP_010536792.1 81 HICSECGKGFKSGKALGGHKRIH 103 68*****************9998 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.0009 | 133 | 155 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C C + F++ L H+r H XP_010536792.1 133 FACCVCRRKFTSMKALYGHMRFH 155 78*******************99 PP | |||||||
3 | zf-C2H2 | 11 | 0.0014 | 325 | 347 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+ksF++ L H +H XP_010536792.1 325 HVCVTCNKSFPSYQALGGHRASH 347 79**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.5E-9 | 80 | 103 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.91E-8 | 80 | 155 | No hit | No description |
SMART | SM00355 | 0.047 | 81 | 103 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.092 | 81 | 108 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.9E-5 | 82 | 106 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.36 | 133 | 155 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.723 | 133 | 155 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.029 | 133 | 156 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 135 | 155 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.29 | 325 | 347 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.3E-11 | 325 | 349 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.64E-7 | 325 | 347 | No hit | No description |
PROSITE profile | PS50157 | 9.536 | 325 | 352 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 327 | 347 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.64E-7 | 381 | 408 | No hit | No description |
SMART | SM00355 | 0.082 | 386 | 408 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.078 | 386 | 408 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.4E-12 | 386 | 409 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 388 | 408 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MDEEEAQYEA CEFSAVSSGE AEAEARSGPI KLRIPNFKSF VEEDYDDRGA KDVEDESEED 60 RDGDHGAGNK VEDGGGEGQT HICSECGKGF KSGKALGGHK RIHGNETSRS REKPRMIIPH 120 SANLELVHGF VEFACCVCRR KFTSMKALYG HMRFHPDRGW RGVQPPQTRP GSSSSTLSLD 180 HDHFNSDYDG DGDGDDDDDD GGENSGFSDC NLESIVPDMV VDLKESTKGW SITGKRGRRS 240 SSKVETNPED DMQEAVNDLL MLANAETGPE KPRNPDILES SEKAEENVLE QKKIRRKKRR 300 LSDMEKTSNR DELDHHIDGT NPPKHVCVTC NKSFPSYQAL GGHRASHNKA KNESSGVGAY 360 TLLASEATGL VSGQGSNTSV SSNGDHQCNI CQKRFPTGQA LGGHKRCHWV GPAAEAAGSS 420 TSQATDQTQE AKVQRPVLSI DLNEPPPKEE GSGGETTVR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 291 | 299 | KKIRRKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010536792.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010536792.1 | 0.0 | PREDICTED: zinc finger protein ZAT9 | ||||
TrEMBL | R0EWN0 | 3e-94 | R0EWN0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010536792.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6618 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 1e-85 | C2H2 family protein |