PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010533177.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C3H

Protein Properties

Length: 311aa MW: 34258.6 Da PI: 8.2544

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010533177.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.6	9.2e-08	23	47	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C +f+ G C+ G+ C+FaHg XP_010533177.1 23 YKTRMCARFRL-GACRNGEGCNFAHG 47 9********.***********8 PP
2	zf-CCCH	17.6	6.9e-06	99	121	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lCr f + +C+yGdrC+F H XP_010533177.1 99 MKLCRSFCCGEECPYGDRCNFLH 121 677888888559*********** PP
3	zf-CCCH	44.2	3.2e-14	198	224	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f tG+C++Gd+C+FaHg+ XP_010533177.1 198 WKTRLCMKFEMTGHCPFGDKCHFAHGQ 224 8************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	4.0E-14	20	55	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.23E-8	21	53	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.333	22	49	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.034	22	48	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-4	23	47	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.896	96	124	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.18	96	123	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.06E-6	97	122	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-6	99	122	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.23E-10	195	228	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-15	196	227	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.61	197	225	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.3E-7	197	224	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.4E-11	198	224	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MNSRTTAMAM APPANKGTAN IFYKTRMCAR FRLGACRNGE GCNFAHGIED LRQPPSNWQE 60 LVGATAIEER DRDRERHTLS VVVGDTNSWD EDQKIIQRMK LCRSFCCGEE CPYGDRCNFL 120 HEDLAKYRDD SSKLRESSAI SISIGNGGSD ALVGNVCSSA SQIEALIHGG PMLIPVPPPV 180 PSSNANSNSN SNSKTVYWKT RLCMKFEMTG HCPFGDKCHF AHGQAELHTT VGRVEGEVRY 240 ASKLHTMTGN NALAAKATAQ VTAASSSSPN EEARRKKCLF KWSNPKKINR IYADWIDDLP 300 VGQTPTKPVE N

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010533177.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010533177.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 39-like
Refseq	XP_010533178.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 39-like
Swissprot	Q9LT81	1e-123	C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBL	R0HYU2	1e-123	R0HYU2_9BRAS; Uncharacterized protein
STRING	XP_010533177.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10066	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	1e-109	C3H family protein