PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531323.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 304aa    MW: 34106.6 Da    PI: 5.0434
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531323.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12130176455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++N+++  L  llP +     kK++Ka++Le A+ ++k Lq
  XP_010531323.1 130 EHVIAERKRRQKLNERLIALSALLPGL-----KKVDKATVLEDAISHVKRLQ 176
                     6999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.326126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16130194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10130176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16130194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.33E-12131180No hitNo description
SMARTSM003539.6E-14132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007029Biological Processendoplasmic reticulum organization
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEESSFMDLM DTNEYFIDEL DLDSSLFGET FDDTKPATEP NGSDRWEIIT DKTQVFEPVC  60
ERPTKQVKPN HNTNYSSSPS SSSSSISPSS QLISFGDCNV SNIMGMEQQF RQATSSKKST  120
TRKQPHTMKE HVIAERKRRQ KLNERLIALS ALLPGLKKVD KATVLEDAIS HVKRLQERVK  180
QLEEEQGSTT KSMESVIFVK RSVLSEDEDS LASSDEQISR RTLPLIEAKV SNQDLLLRIL  240
CEKSKGCLGK ILSTMEMLQL DVASSFTLPF GNSTLDITIL AKMDSNFSRP VKDVVENIRS  300
AIAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139ERKRRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates the expression of at least NAI2, PYK10 and PBP1. Required for and mediates the formation of endoplasmic reticulum bodies (ER bodies). Involved in the symbiotic interactions with the endophytes of the Sebacinaceae fungus family, such as Piriformospora indica and Sebacina. {ECO:0000269|PubMed:12581307, ECO:0000269|PubMed:15155889, ECO:0000269|PubMed:15919674, ECO:0000269|PubMed:18248598, ECO:0000269|PubMed:18467340, ECO:0000269|PubMed:18780803}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010531323.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531323.10.0PREDICTED: transcription factor NAI1 isoform X2
RefseqXP_019057380.10.0PREDICTED: transcription factor NAI1 isoform X1
SwissprotQ8S3F11e-87BH020_ARATH; Transcription factor NAI1
TrEMBLD7LE352e-88D7LE35_ARALL; Uncharacterized protein
STRINGXP_010531323.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136071726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.13e-87bHLH family protein
Publications ? help Back to Top
  1. Hakenjos JP, et al.
    ML3 is a NEDD8- and ubiquitin-modified protein.
    Plant Physiol., 2013. 163(1): p. 135-49
    [PMID:23903439]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yoshii M,Yamamoto A,Kagaya Y,Takeda S,Hattori T
    The Arabidopsis transcription factor NAI1 is required for enhancing the active histone mark but not for removing the repressive mark on PYK10, a seedling-specific gene upon embryonic-to-postgerminative developmental phase transition.
    Plant Signal Behav, 2015. 10(12): p. e1105418
    [PMID:26479492]